Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2983 and Psest_2984 are separated by 51 nucleotides Psest_2984 and Psest_2985 are separated by 70 nucleotides Psest_2985 and Psest_2986 are separated by 109 nucleotides Psest_2986 and Psest_2987 are separated by 62 nucleotides Psest_2987 and Psest_2988 are separated by 180 nucleotides Psest_2988 and Psest_2989 are separated by 112 nucleotides
Psest_2983: Psest_2983 - hypothetical protein, at 3,175,660 to 3,176,142
_2983
Psest_2984: Psest_2984 - tRNA_Arg_ACG, at 3,176,194 to 3,176,270
_2984
Psest_2985: Psest_2985 - tRNA_Arg_ACG, at 3,176,341 to 3,176,417
_2985
Psest_2986: Psest_2986 - tRNA_Ser_GCT, at 3,176,527 to 3,176,617
_2986
Psest_2987: Psest_2987 - carbon storage regulator (csrA), at 3,176,680 to 3,176,865
_2987
Psest_2988: Psest_2988 - aspartate kinase, monofunctional class, at 3,177,046 to 3,178,284
_2988
Psest_2989: Psest_2989 - alanine--tRNA ligase, at 3,178,397 to 3,181,021
_2989
Position (kb)
3177
3178
3179 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3176.245 kb on - strand, within Psest_2984 at 3176.263 kb on - strand at 3176.263 kb on - strand at 3176.263 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.284 kb on - strand at 3176.284 kb on - strand at 3176.946 kb on - strand at 3176.946 kb on - strand at 3176.985 kb on - strand at 3176.985 kb on - strand at 3177.010 kb on - strand at 3177.010 kb on - strand at 3177.010 kb on - strand at 3177.120 kb on - strand at 3177.120 kb on - strand at 3177.120 kb on - strand at 3177.323 kb on - strand, within Psest_2988 at 3177.323 kb on - strand, within Psest_2988 at 3177.342 kb on - strand, within Psest_2988 at 3177.469 kb on - strand, within Psest_2988 at 3177.469 kb on - strand, within Psest_2988 at 3177.621 kb on - strand, within Psest_2988 at 3177.621 kb on - strand, within Psest_2988 at 3177.621 kb on - strand, within Psest_2988 at 3177.621 kb on - strand, within Psest_2988 at 3177.621 kb on - strand, within Psest_2988 at 3177.621 kb on - strand, within Psest_2988 at 3177.750 kb on - strand, within Psest_2988 at 3177.750 kb on - strand, within Psest_2988 at 3177.750 kb on - strand, within Psest_2988 at 3177.750 kb on - strand, within Psest_2988 at 3177.750 kb on - strand at 3177.771 kb on - strand, within Psest_2988 at 3177.853 kb on - strand, within Psest_2988 at 3178.002 kb on - strand, within Psest_2988 at 3178.058 kb on - strand, within Psest_2988 at 3178.115 kb on - strand, within Psest_2988 at 3178.180 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.326 kb on - strand at 3178.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml remove 3,176,245 - Psest_2984 0.66 -0.0 3,176,263 - +1.0 3,176,263 - -0.3 3,176,263 - -0.8 3,176,273 - -0.2 3,176,273 - -0.2 3,176,273 - +0.4 3,176,273 - +0.6 3,176,273 - -1.8 3,176,273 - -0.4 3,176,273 - +0.2 3,176,284 - +0.6 3,176,284 - +0.0 3,176,946 - +1.9 3,176,946 - +1.8 3,176,985 - +1.8 3,176,985 - +2.1 3,177,010 - +1.9 3,177,010 - +1.8 3,177,010 - +2.2 3,177,120 - -0.7 3,177,120 - -3.5 3,177,120 - -0.6 3,177,323 - Psest_2988 0.22 -1.9 3,177,323 - Psest_2988 0.22 -0.8 3,177,342 - Psest_2988 0.24 -1.8 3,177,469 - Psest_2988 0.34 -3.8 3,177,469 - Psest_2988 0.34 -0.6 3,177,621 - Psest_2988 0.46 -0.5 3,177,621 - Psest_2988 0.46 -1.8 3,177,621 - Psest_2988 0.46 -1.8 3,177,621 - Psest_2988 0.46 -1.6 3,177,621 - Psest_2988 0.46 -1.1 3,177,621 - Psest_2988 0.46 -0.5 3,177,750 - Psest_2988 0.57 -1.0 3,177,750 - Psest_2988 0.57 -2.2 3,177,750 - Psest_2988 0.57 -1.8 3,177,750 - Psest_2988 0.57 -3.6 3,177,750 - -0.6 3,177,771 - Psest_2988 0.59 -0.5 3,177,853 - Psest_2988 0.65 -3.9 3,178,002 - Psest_2988 0.77 -2.6 3,178,058 - Psest_2988 0.82 -1.3 3,178,115 - Psest_2988 0.86 -3.9 3,178,180 - -1.8 3,178,326 - +0.7 3,178,326 - -0.0 3,178,326 - +0.2 3,178,326 - -0.0 3,178,326 - +0.8 3,178,326 - +0.7 3,178,326 - -0.2 3,178,326 - +0.5 3,178,326 - +0.9 3,178,326 - +0.4 3,178,326 - +0.9 3,178,326 - +1.3 3,178,326 - +1.5 3,178,373 - +0.7
Or see this region's nucleotide sequence