Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0206 and Psest_0207 are separated by 78 nucleotides Psest_0207 and Psest_0208 are separated by 1 nucleotides Psest_0208 and Psest_0209 are separated by 1 nucleotides
Psest_0206: Psest_0206 - Uncharacterized protein conserved in bacteria, at 206,341 to 207,315
_0206
Psest_0207: Psest_0207 - hypothetical protein, at 207,394 to 207,837
_0207
Psest_0208: Psest_0208 - Uncharacterized protein conserved in bacteria, at 207,839 to 209,353
_0208
Psest_0209: Psest_0209 - membrane protein AbrB duplication, at 209,355 to 210,383
_0209
Position (kb) 207
208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 206.888 kb on - strand, within Psest_0206 at 207.077 kb on - strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.109 kb on + strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.110 kb on - strand, within Psest_0206 at 207.277 kb on + strand at 207.277 kb on + strand at 207.277 kb on + strand at 207.277 kb on + strand at 207.277 kb on + strand at 207.277 kb on + strand at 207.278 kb on - strand at 207.278 kb on - strand at 207.314 kb on - strand at 207.344 kb on - strand at 207.397 kb on + strand at 207.397 kb on + strand at 207.397 kb on + strand at 207.397 kb on + strand at 207.397 kb on + strand at 207.397 kb on + strand at 207.397 kb on + strand at 207.397 kb on + strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.398 kb on - strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.401 kb on + strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.402 kb on - strand at 207.640 kb on + strand, within Psest_0207 at 207.640 kb on + strand, within Psest_0207 at 207.640 kb on + strand, within Psest_0207 at 207.641 kb on - strand, within Psest_0207 at 207.641 kb on - strand, within Psest_0207 at 207.770 kb on - strand, within Psest_0207 at 207.785 kb on - strand, within Psest_0207 at 208.047 kb on - strand, within Psest_0208 at 208.283 kb on + strand, within Psest_0208 at 208.283 kb on + strand, within Psest_0208 at 208.283 kb on + strand, within Psest_0208 at 208.283 kb on + strand, within Psest_0208 at 208.416 kb on - strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.679 kb on + strand, within Psest_0208 at 208.680 kb on - strand, within Psest_0208 at 208.680 kb on - strand, within Psest_0208 at 208.680 kb on - strand, within Psest_0208 at 208.680 kb on - strand, within Psest_0208 at 208.680 kb on - strand, within Psest_0208 at 208.859 kb on + strand, within Psest_0208 at 208.859 kb on + strand, within Psest_0208 at 208.860 kb on - strand, within Psest_0208 at 208.860 kb on - strand, within Psest_0208 at 208.860 kb on - strand, within Psest_0208 at 208.860 kb on - strand, within Psest_0208 at 209.054 kb on + strand, within Psest_0208 at 209.055 kb on - strand, within Psest_0208 at 209.114 kb on + strand, within Psest_0208 at 209.238 kb on - strand at 209.238 kb on - strand at 209.309 kb on + strand at 209.509 kb on + strand, within Psest_0209 at 209.899 kb on + strand, within Psest_0209
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml remove 206,888 - Psest_0206 0.56 +0.1 207,077 - Psest_0206 0.75 +0.8 207,109 + Psest_0206 0.79 +1.6 207,109 + Psest_0206 0.79 -0.0 207,109 + Psest_0206 0.79 +0.8 207,109 + Psest_0206 0.79 +0.9 207,109 + Psest_0206 0.79 +1.1 207,109 + Psest_0206 0.79 -1.0 207,109 + Psest_0206 0.79 +0.1 207,109 + Psest_0206 0.79 +0.5 207,109 + Psest_0206 0.79 +2.1 207,109 + Psest_0206 0.79 +0.9 207,109 + Psest_0206 0.79 +1.8 207,109 + Psest_0206 0.79 +0.2 207,110 - Psest_0206 0.79 -0.7 207,110 - Psest_0206 0.79 -0.5 207,110 - Psest_0206 0.79 -0.7 207,110 - Psest_0206 0.79 +0.1 207,110 - Psest_0206 0.79 +0.1 207,110 - Psest_0206 0.79 +0.7 207,110 - Psest_0206 0.79 +0.5 207,110 - Psest_0206 0.79 +0.1 207,110 - Psest_0206 0.79 +1.1 207,110 - Psest_0206 0.79 +0.3 207,110 - Psest_0206 0.79 -0.3 207,110 - Psest_0206 0.79 +1.1 207,110 - Psest_0206 0.79 +1.1 207,110 - Psest_0206 0.79 +2.1 207,277 + -0.5 207,277 + +1.3 207,277 + +0.3 207,277 + -0.5 207,277 + -2.5 207,277 + +0.5 207,278 - -1.7 207,278 - -0.4 207,314 - +0.3 207,344 - +0.7 207,397 + +1.1 207,397 + -0.5 207,397 + +0.3 207,397 + +0.5 207,397 + -0.9 207,397 + -0.9 207,397 + -0.1 207,397 + +1.1 207,398 - -0.4 207,398 - -1.4 207,398 - +1.1 207,398 - -1.7 207,398 - +0.8 207,398 - -0.1 207,398 - -0.3 207,398 - +0.1 207,398 - -1.5 207,398 - -1.7 207,398 - +1.1 207,398 - -1.2 207,398 - -0.2 207,398 - -1.7 207,398 - -1.9 207,398 - -2.4 207,398 - -1.1 207,398 - -1.1 207,401 + -2.1 207,401 + -0.7 207,401 + +0.5 207,401 + -1.8 207,401 + -1.2 207,401 + -0.9 207,401 + -0.5 207,401 + -0.7 207,401 + +0.7 207,401 + +0.7 207,401 + +0.6 207,401 + +0.1 207,402 - -0.8 207,402 - -0.8 207,402 - +0.2 207,402 - -1.2 207,402 - +0.3 207,402 - -0.8 207,402 - -1.4 207,402 - -0.8 207,402 - -1.5 207,402 - -0.7 207,402 - -0.9 207,402 - -0.7 207,402 - -1.9 207,402 - +0.1 207,402 - -1.0 207,402 - +0.1 207,640 + Psest_0207 0.55 +0.1 207,640 + Psest_0207 0.55 -0.9 207,640 + Psest_0207 0.55 -0.9 207,641 - Psest_0207 0.56 -2.5 207,641 - Psest_0207 0.56 -2.4 207,770 - Psest_0207 0.85 -0.7 207,785 - Psest_0207 0.88 -0.5 208,047 - Psest_0208 0.14 -1.0 208,283 + Psest_0208 0.29 -1.7 208,283 + Psest_0208 0.29 -1.0 208,283 + Psest_0208 0.29 -0.6 208,283 + Psest_0208 0.29 +1.1 208,416 - Psest_0208 0.38 -0.3 208,679 + Psest_0208 0.55 -1.7 208,679 + Psest_0208 0.55 +0.1 208,679 + Psest_0208 0.55 +0.1 208,679 + Psest_0208 0.55 -0.5 208,679 + Psest_0208 0.55 +2.1 208,679 + Psest_0208 0.55 -0.9 208,679 + Psest_0208 0.55 -0.4 208,679 + Psest_0208 0.55 +2.1 208,679 + Psest_0208 0.55 +0.0 208,679 + Psest_0208 0.55 -0.5 208,679 + Psest_0208 0.55 -0.2 208,680 - Psest_0208 0.56 -1.4 208,680 - Psest_0208 0.56 +0.9 208,680 - Psest_0208 0.56 -0.9 208,680 - Psest_0208 0.56 -1.4 208,680 - Psest_0208 0.56 -0.9 208,859 + Psest_0208 0.67 -1.2 208,859 + Psest_0208 0.67 -0.9 208,860 - Psest_0208 0.67 -1.2 208,860 - Psest_0208 0.67 +0.3 208,860 - Psest_0208 0.67 +0.1 208,860 - Psest_0208 0.67 -0.9 209,054 + Psest_0208 0.80 -0.9 209,055 - Psest_0208 0.80 -2.9 209,114 + Psest_0208 0.84 +0.5 209,238 - +0.1 209,238 - -1.9 209,309 + +0.5 209,509 + Psest_0209 0.15 -2.5 209,899 + Psest_0209 0.53 +1.1
Or see this region's nucleotide sequence