Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0193

Experiment: Def Cisplatin 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0192 and Psest_0193 are separated by 307 nucleotidesPsest_0193 and Psest_0194 are separated by 178 nucleotidesPsest_0194 and Psest_0195 are separated by 110 nucleotides Psest_0192: Psest_0192 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 188,256 to 189,602 _0192 Psest_0193: Psest_0193 - conserved hypothetical protein, at 189,910 to 190,341 _0193 Psest_0194: Psest_0194 - hypothetical protein, at 190,520 to 190,756 _0194 Psest_0195: Psest_0195 - Small integral membrane protein, at 190,867 to 191,037 _0195 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 188.982 kb on + strand, within Psest_0192at 189.286 kb on + strand, within Psest_0192at 189.287 kb on - strand, within Psest_0192at 189.287 kb on - strand, within Psest_0192at 189.393 kb on + strand, within Psest_0192at 189.393 kb on + strand, within Psest_0192at 189.393 kb on + strand, within Psest_0192at 189.393 kb on + strand, within Psest_0192at 189.394 kb on - strand, within Psest_0192at 189.394 kb on - strand, within Psest_0192at 189.394 kb on - strand, within Psest_0192at 189.394 kb on - strand, within Psest_0192at 189.394 kb on - strand, within Psest_0192at 189.394 kb on - strand, within Psest_0192at 189.394 kb on - strand, within Psest_0192at 189.394 kb on - strand, within Psest_0192at 189.503 kb on + strandat 189.503 kb on + strandat 189.503 kb on + strandat 189.503 kb on + strandat 189.505 kb on + strandat 189.505 kb on + strandat 189.536 kb on + strandat 189.537 kb on - strandat 189.650 kb on + strandat 189.788 kb on + strandat 189.789 kb on - strandat 189.974 kb on - strand, within Psest_0193at 190.138 kb on + strand, within Psest_0193at 190.474 kb on - strandat 190.505 kb on + strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strandat 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.881 kb on + strandat 190.881 kb on + strandat 190.881 kb on + strandat 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.974 kb on - strand, within Psest_0195at 190.974 kb on - strand, within Psest_0195at 191.089 kb on + strandat 191.089 kb on + strandat 191.089 kb on + strandat 191.089 kb on + strandat 191.089 kb on + strandat 191.090 kb on - strandat 191.090 kb on - strandat 191.090 kb on - strandat 191.222 kb on + strandat 191.222 kb on + strandat 191.222 kb on + strandat 191.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml
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188,982 + Psest_0192 0.54 -0.5
189,286 + Psest_0192 0.76 -0.5
189,287 - Psest_0192 0.77 -0.5
189,287 - Psest_0192 0.77 +1.1
189,393 + Psest_0192 0.84 -2.4
189,393 + Psest_0192 0.84 -2.2
189,393 + Psest_0192 0.84 -0.5
189,393 + Psest_0192 0.84 -0.8
189,394 - Psest_0192 0.84 -0.6
189,394 - Psest_0192 0.84 -0.3
189,394 - Psest_0192 0.84 +0.5
189,394 - Psest_0192 0.84 +0.9
189,394 - Psest_0192 0.84 +0.1
189,394 - Psest_0192 0.84 +1.9
189,394 - Psest_0192 0.84 +1.2
189,394 - Psest_0192 0.84 +2.0
189,503 + -0.5
189,503 + +0.1
189,503 + -1.8
189,503 + -2.8
189,505 + -1.2
189,505 + -1.9
189,536 + -2.5
189,537 - -0.9
189,650 + -0.3
189,788 + -0.6
189,789 - +0.4
189,974 - Psest_0193 0.15 -0.4
190,138 + Psest_0193 0.53 -2.2
190,474 - +0.6
190,505 + -1.8
190,506 - -0.1
190,506 - +0.4
190,506 - +1.1
190,506 - +0.1
190,506 - +0.5
190,506 - -0.2
190,506 - +1.3
190,661 + Psest_0194 0.59 -0.8
190,661 + Psest_0194 0.59 +0.9
190,661 + Psest_0194 0.59 +0.1
190,661 + Psest_0194 0.59 +0.6
190,661 + Psest_0194 0.59 +0.2
190,661 + Psest_0194 0.59 +0.2
190,661 + Psest_0194 0.59 -1.1
190,661 + Psest_0194 0.59 +0.1
190,661 + Psest_0194 0.59 -1.0
190,661 + Psest_0194 0.59 -0.2
190,661 + Psest_0194 0.59 +0.2
190,661 + Psest_0194 0.59 -0.2
190,662 - Psest_0194 0.60 -0.2
190,662 - Psest_0194 0.60 -0.3
190,662 - Psest_0194 0.60 -0.6
190,662 - Psest_0194 0.60 +0.6
190,662 - Psest_0194 0.60 -0.4
190,662 - Psest_0194 0.60 +1.2
190,662 - Psest_0194 0.60 -0.9
190,662 - Psest_0194 0.60 +0.3
190,662 - Psest_0194 0.60 +0.2
190,675 + Psest_0194 0.65 +0.2
190,675 + Psest_0194 0.65 -0.9
190,675 + Psest_0194 0.65 -0.5
190,675 + Psest_0194 0.65 +0.2
190,675 + Psest_0194 0.65 +0.0
190,675 + Psest_0194 0.65 +0.3
190,676 - Psest_0194 0.66 +0.1
190,676 - Psest_0194 0.66 -0.0
190,676 - Psest_0194 0.66 +1.1
190,676 - -0.5
190,676 - Psest_0194 0.66 +0.9
190,676 - Psest_0194 0.66 +0.3
190,881 + +0.1
190,881 + -0.2
190,881 + +0.3
190,884 + Psest_0195 0.10 -0.9
190,884 + Psest_0195 0.10 -0.0
190,884 + Psest_0195 0.10 -3.2
190,884 + Psest_0195 0.10 +0.8
190,884 + Psest_0195 0.10 -1.1
190,884 + Psest_0195 0.10 +0.1
190,884 + Psest_0195 0.10 +0.5
190,884 + Psest_0195 0.10 +0.7
190,884 + Psest_0195 0.10 +0.1
190,884 + Psest_0195 0.10 -0.5
190,884 + Psest_0195 0.10 -0.7
190,884 + Psest_0195 0.10 -0.7
190,884 + Psest_0195 0.10 -1.2
190,884 + Psest_0195 0.10 +0.0
190,884 + Psest_0195 0.10 -1.0
190,884 + Psest_0195 0.10 +0.9
190,885 - Psest_0195 0.11 +0.6
190,885 - Psest_0195 0.11 +1.3
190,885 - Psest_0195 0.11 +0.2
190,885 - Psest_0195 0.11 +0.4
190,885 - Psest_0195 0.11 +0.2
190,885 - Psest_0195 0.11 -0.4
190,885 - Psest_0195 0.11 -0.2
190,885 - Psest_0195 0.11 +0.6
190,885 - Psest_0195 0.11 +0.7
190,885 - Psest_0195 0.11 +0.0
190,974 - Psest_0195 0.63 -2.4
190,974 - Psest_0195 0.63 +0.3
191,089 + +2.1
191,089 + -0.4
191,089 + +1.6
191,089 + -0.1
191,089 + +0.2
191,090 - -1.9
191,090 - +1.3
191,090 - +1.0
191,222 + -0.7
191,222 + -1.5
191,222 + -0.1
191,324 - +0.6

Or see this region's nucleotide sequence