Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1869

Experiment: Def Cisplatin 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1866 and Psest_1867 are separated by 4 nucleotidesPsest_1867 and Psest_1868 are separated by 82 nucleotidesPsest_1868 and Psest_1869 are separated by 173 nucleotidesPsest_1869 and Psest_1870 are separated by 183 nucleotidesPsest_1870 and Psest_1871 are separated by 162 nucleotides Psest_1866: Psest_1866 - Uncharacterized protein conserved in bacteria, at 1,976,916 to 1,977,335 _1866 Psest_1867: Psest_1867 - hypothetical protein, at 1,977,340 to 1,977,438 _1867 Psest_1868: Psest_1868 - yecA family protein, at 1,977,521 to 1,978,108 _1868 Psest_1869: Psest_1869 - ATP-dependent DNA helicase RecQ, at 1,978,282 to 1,980,405 _1869 Psest_1870: Psest_1870 - Transcriptional regulators, at 1,980,589 to 1,981,020 _1870 Psest_1871: Psest_1871 - Predicted esterase of the alpha-beta hydrolase superfamily, at 1,981,183 to 1,983,414 _1871 Position (kb) 1978 1979 1980 1981Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1977.579 kb on + strandat 1977.579 kb on + strandat 1977.580 kb on - strand, within Psest_1868at 1977.884 kb on + strand, within Psest_1868at 1977.884 kb on + strand, within Psest_1868at 1977.885 kb on - strand, within Psest_1868at 1977.885 kb on - strand, within Psest_1868at 1977.885 kb on - strand, within Psest_1868at 1977.933 kb on + strand, within Psest_1868at 1977.933 kb on + strand, within Psest_1868at 1977.933 kb on + strand, within Psest_1868at 1977.933 kb on + strand, within Psest_1868at 1978.032 kb on + strand, within Psest_1868at 1978.033 kb on - strand, within Psest_1868at 1978.033 kb on - strand, within Psest_1868at 1978.116 kb on + strandat 1978.116 kb on + strandat 1978.183 kb on + strandat 1978.252 kb on + strandat 1978.252 kb on + strandat 1978.252 kb on + strandat 1978.252 kb on + strandat 1978.253 kb on - strandat 1978.253 kb on - strandat 1978.254 kb on + strandat 1978.254 kb on + strandat 1978.254 kb on + strandat 1978.254 kb on + strandat 1978.255 kb on - strandat 1978.255 kb on - strandat 1978.662 kb on - strand, within Psest_1869at 1978.741 kb on + strand, within Psest_1869at 1978.742 kb on - strand, within Psest_1869at 1978.900 kb on + strand, within Psest_1869at 1979.215 kb on + strand, within Psest_1869at 1979.215 kb on + strand, within Psest_1869at 1979.215 kb on + strand, within Psest_1869at 1979.216 kb on - strand, within Psest_1869at 1979.216 kb on - strand, within Psest_1869at 1979.422 kb on + strand, within Psest_1869at 1979.438 kb on + strand, within Psest_1869at 1979.464 kb on - strand, within Psest_1869at 1979.530 kb on + strand, within Psest_1869at 1979.531 kb on - strand, within Psest_1869at 1979.531 kb on - strand, within Psest_1869at 1979.567 kb on + strand, within Psest_1869at 1979.567 kb on + strand, within Psest_1869at 1979.567 kb on + strand, within Psest_1869at 1979.568 kb on - strand, within Psest_1869at 1979.596 kb on - strand, within Psest_1869at 1979.600 kb on + strand, within Psest_1869at 1979.600 kb on + strand, within Psest_1869at 1979.600 kb on + strand, within Psest_1869at 1979.600 kb on + strand, within Psest_1869at 1979.600 kb on + strand, within Psest_1869at 1979.600 kb on + strand, within Psest_1869at 1979.600 kb on + strand, within Psest_1869at 1979.600 kb on + strand, within Psest_1869at 1979.600 kb on + strand, within Psest_1869at 1979.601 kb on - strand, within Psest_1869at 1979.601 kb on - strand, within Psest_1869at 1979.601 kb on - strand, within Psest_1869at 1979.601 kb on - strand, within Psest_1869at 1979.929 kb on + strand, within Psest_1869at 1979.929 kb on + strand, within Psest_1869at 1979.929 kb on + strand, within Psest_1869at 1980.072 kb on + strand, within Psest_1869at 1980.073 kb on - strand, within Psest_1869at 1980.187 kb on + strand, within Psest_1869at 1980.260 kb on + strandat 1980.364 kb on + strandat 1980.364 kb on + strandat 1980.403 kb on + strandat 1980.455 kb on + strandat 1980.455 kb on + strandat 1980.456 kb on - strandat 1980.456 kb on - strandat 1980.497 kb on + strandat 1980.497 kb on + strandat 1980.497 kb on + strandat 1980.559 kb on + strandat 1980.559 kb on + strandat 1980.559 kb on + strandat 1980.559 kb on + strandat 1980.560 kb on - strandat 1980.563 kb on + strandat 1980.563 kb on + strandat 1980.564 kb on - strandat 1980.592 kb on + strandat 1980.592 kb on + strandat 1980.592 kb on + strandat 1980.592 kb on + strandat 1980.592 kb on + strandat 1980.824 kb on + strand, within Psest_1870at 1980.824 kb on + strand, within Psest_1870at 1981.104 kb on + strandat 1981.184 kb on + strandat 1981.206 kb on + strandat 1981.206 kb on + strandat 1981.206 kb on + strandat 1981.206 kb on + strandat 1981.206 kb on + strandat 1981.207 kb on - strandat 1981.207 kb on - strandat 1981.207 kb on - strandat 1981.207 kb on - strandat 1981.208 kb on + strandat 1981.208 kb on + strandat 1981.208 kb on + strandat 1981.208 kb on + strandat 1981.208 kb on + strandat 1981.208 kb on + strandat 1981.208 kb on + strandat 1981.209 kb on - strandat 1981.209 kb on - strandat 1981.251 kb on + strandat 1981.305 kb on - strandat 1981.305 kb on - strandat 1981.368 kb on - strandat 1981.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml
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1,977,579 + -0.3
1,977,579 + -0.9
1,977,580 - Psest_1868 0.10 -0.1
1,977,884 + Psest_1868 0.62 -0.5
1,977,884 + Psest_1868 0.62 +1.6
1,977,885 - Psest_1868 0.62 +0.1
1,977,885 - Psest_1868 0.62 -0.6
1,977,885 - Psest_1868 0.62 -0.7
1,977,933 + Psest_1868 0.70 -1.3
1,977,933 + Psest_1868 0.70 -0.1
1,977,933 + Psest_1868 0.70 -0.4
1,977,933 + Psest_1868 0.70 -0.3
1,978,032 + Psest_1868 0.87 -2.2
1,978,033 - Psest_1868 0.87 +0.4
1,978,033 - Psest_1868 0.87 -0.7
1,978,116 + +0.0
1,978,116 + -0.1
1,978,183 + -3.0
1,978,252 + +0.0
1,978,252 + +0.6
1,978,252 + -2.4
1,978,252 + +0.3
1,978,253 - +0.1
1,978,253 - +1.0
1,978,254 + -0.9
1,978,254 + -0.5
1,978,254 + +0.5
1,978,254 + -0.3
1,978,255 - -1.1
1,978,255 - -1.0
1,978,662 - Psest_1869 0.18 -1.1
1,978,741 + Psest_1869 0.22 -1.4
1,978,742 - Psest_1869 0.22 -0.4
1,978,900 + Psest_1869 0.29 -1.4
1,979,215 + Psest_1869 0.44 -1.1
1,979,215 + Psest_1869 0.44 -0.7
1,979,215 + Psest_1869 0.44 +0.2
1,979,216 - Psest_1869 0.44 -2.6
1,979,216 - Psest_1869 0.44 +0.3
1,979,422 + Psest_1869 0.54 -1.1
1,979,438 + Psest_1869 0.54 -1.4
1,979,464 - Psest_1869 0.56 -1.2
1,979,530 + Psest_1869 0.59 -1.2
1,979,531 - Psest_1869 0.59 -1.6
1,979,531 - Psest_1869 0.59 -2.9
1,979,567 + Psest_1869 0.60 -0.1
1,979,567 + Psest_1869 0.60 -0.4
1,979,567 + Psest_1869 0.60 +0.0
1,979,568 - Psest_1869 0.61 -2.4
1,979,596 - Psest_1869 0.62 +0.1
1,979,600 + Psest_1869 0.62 -0.9
1,979,600 + Psest_1869 0.62 -1.6
1,979,600 + Psest_1869 0.62 -1.6
1,979,600 + Psest_1869 0.62 -0.7
1,979,600 + Psest_1869 0.62 -1.7
1,979,600 + Psest_1869 0.62 -2.1
1,979,600 + Psest_1869 0.62 -1.5
1,979,600 + Psest_1869 0.62 -2.1
1,979,600 + Psest_1869 0.62 -1.2
1,979,601 - Psest_1869 0.62 -1.7
1,979,601 - Psest_1869 0.62 -1.1
1,979,601 - Psest_1869 0.62 -0.1
1,979,601 - Psest_1869 0.62 -1.1
1,979,929 + Psest_1869 0.78 -0.7
1,979,929 + Psest_1869 0.78 -3.1
1,979,929 + Psest_1869 0.78 -4.5
1,980,072 + Psest_1869 0.84 -0.4
1,980,073 - Psest_1869 0.84 +0.1
1,980,187 + Psest_1869 0.90 -0.1
1,980,260 + -1.8
1,980,364 + -0.2
1,980,364 + -1.1
1,980,403 + -0.2
1,980,455 + -0.6
1,980,455 + -0.7
1,980,456 - -3.9
1,980,456 - +0.3
1,980,497 + -1.1
1,980,497 + -0.4
1,980,497 + -0.5
1,980,559 + -0.3
1,980,559 + -0.3
1,980,559 + -0.2
1,980,559 + +0.5
1,980,560 - -1.5
1,980,563 + +0.3
1,980,563 + -0.0
1,980,564 - -0.3
1,980,592 + +0.1
1,980,592 + -0.7
1,980,592 + +0.9
1,980,592 + -0.2
1,980,592 + -0.0
1,980,824 + Psest_1870 0.54 +1.5
1,980,824 + Psest_1870 0.54 -0.1
1,981,104 + +0.4
1,981,184 + -0.7
1,981,206 + +0.3
1,981,206 + +0.2
1,981,206 + +1.0
1,981,206 + -1.3
1,981,206 + -2.7
1,981,207 - -0.6
1,981,207 - +0.4
1,981,207 - +0.2
1,981,207 - +0.1
1,981,208 + -0.6
1,981,208 + +1.2
1,981,208 + -0.1
1,981,208 + -0.3
1,981,208 + -0.2
1,981,208 + -0.2
1,981,208 + +0.1
1,981,209 - +0.1
1,981,209 - -0.7
1,981,251 + +0.5
1,981,305 - +0.7
1,981,305 - -0.9
1,981,368 - +0.1
1,981,368 - -0.1

Or see this region's nucleotide sequence