Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1508 and Psest_1509 are separated by 244 nucleotides Psest_1509 and Psest_1510 are separated by 41 nucleotides
Psest_1508: Psest_1508 - succinate CoA transferases, at 1,606,996 to 1,608,492
_1508
Psest_1509: Psest_1509 - quinolinate synthetase complex, A subunit, at 1,608,737 to 1,609,795
_1509
Psest_1510: Psest_1510 - Putative Zn-dependent protease, contains TPR repeats, at 1,609,837 to 1,611,267
_1510
Position (kb)
1608
1609
1610 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1607.851 kb on + strand, within Psest_1508 at 1607.851 kb on + strand, within Psest_1508 at 1607.851 kb on + strand, within Psest_1508 at 1607.851 kb on + strand, within Psest_1508 at 1607.852 kb on - strand, within Psest_1508 at 1607.957 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.977 kb on + strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1607.978 kb on - strand, within Psest_1508 at 1608.082 kb on + strand, within Psest_1508 at 1608.082 kb on + strand, within Psest_1508 at 1608.082 kb on + strand, within Psest_1508 at 1608.082 kb on + strand, within Psest_1508 at 1608.083 kb on - strand, within Psest_1508 at 1608.083 kb on - strand, within Psest_1508 at 1608.083 kb on - strand, within Psest_1508 at 1608.382 kb on + strand at 1608.382 kb on + strand at 1608.382 kb on + strand at 1608.383 kb on - strand at 1608.532 kb on + strand at 1608.598 kb on - strand at 1608.600 kb on + strand at 1608.600 kb on + strand at 1608.691 kb on + strand at 1608.748 kb on - strand at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.884 kb on + strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1609.154 kb on + strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.542 kb on - strand, within Psest_1509 at 1609.542 kb on - strand, within Psest_1509 at 1609.967 kb on + strand at 1609.989 kb on - strand, within Psest_1510 at 1609.989 kb on - strand, within Psest_1510 at 1610.140 kb on + strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.169 kb on - strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.265 kb on - strand, within Psest_1510 at 1610.265 kb on - strand, within Psest_1510
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml remove 1,607,851 + Psest_1508 0.57 -0.5 1,607,851 + Psest_1508 0.57 +0.6 1,607,851 + Psest_1508 0.57 +0.9 1,607,851 + Psest_1508 0.57 -1.5 1,607,852 - Psest_1508 0.57 -0.4 1,607,957 + Psest_1508 0.64 +0.2 1,607,977 + Psest_1508 0.66 -0.1 1,607,977 + Psest_1508 0.66 +0.1 1,607,977 + Psest_1508 0.66 +0.2 1,607,977 + Psest_1508 0.66 -0.4 1,607,977 + Psest_1508 0.66 -0.0 1,607,978 - Psest_1508 0.66 +0.2 1,607,978 - Psest_1508 0.66 +0.2 1,607,978 - Psest_1508 0.66 +0.3 1,607,978 - Psest_1508 0.66 +0.1 1,607,978 - Psest_1508 0.66 -0.4 1,607,978 - Psest_1508 0.66 -0.1 1,607,978 - Psest_1508 0.66 -0.3 1,607,978 - Psest_1508 0.66 -0.0 1,608,082 + Psest_1508 0.73 +0.1 1,608,082 + Psest_1508 0.73 +0.2 1,608,082 + Psest_1508 0.73 +0.9 1,608,082 + Psest_1508 0.73 -0.1 1,608,083 - Psest_1508 0.73 -0.8 1,608,083 - Psest_1508 0.73 +0.9 1,608,083 - Psest_1508 0.73 +0.5 1,608,382 + +0.2 1,608,382 + +0.4 1,608,382 + +0.5 1,608,383 - +0.1 1,608,532 + -0.1 1,608,598 - -1.7 1,608,600 + +1.8 1,608,600 + +0.3 1,608,691 + +1.0 1,608,748 - -1.8 1,608,882 - Psest_1509 0.14 -3.0 1,608,882 - Psest_1509 0.14 -2.2 1,608,882 - Psest_1509 0.14 -4.0 1,608,882 - Psest_1509 0.14 -0.8 1,608,884 + Psest_1509 0.14 -1.4 1,608,885 - Psest_1509 0.14 -4.0 1,608,885 - Psest_1509 0.14 -4.2 1,608,885 - Psest_1509 0.14 -3.4 1,609,154 + Psest_1509 0.39 -3.9 1,609,155 - Psest_1509 0.39 -3.7 1,609,155 - Psest_1509 0.39 -3.6 1,609,155 - Psest_1509 0.39 -2.4 1,609,289 + Psest_1509 0.52 -2.7 1,609,289 + Psest_1509 0.52 -4.9 1,609,289 + Psest_1509 0.52 -5.3 1,609,290 - Psest_1509 0.52 -3.6 1,609,290 - Psest_1509 0.52 -3.7 1,609,290 - Psest_1509 0.52 -3.9 1,609,541 + Psest_1509 0.76 -2.4 1,609,541 + Psest_1509 0.76 -5.5 1,609,541 + Psest_1509 0.76 -3.8 1,609,541 + Psest_1509 0.76 -1.8 1,609,542 - Psest_1509 0.76 -3.2 1,609,542 - Psest_1509 0.76 -3.5 1,609,967 + +1.3 1,609,989 - Psest_1510 0.11 +0.6 1,609,989 - Psest_1510 0.11 -0.2 1,610,140 + Psest_1510 0.21 +0.7 1,610,141 - Psest_1510 0.21 +0.8 1,610,141 - Psest_1510 0.21 +0.5 1,610,141 - Psest_1510 0.21 -0.2 1,610,141 - Psest_1510 0.21 -1.6 1,610,169 - Psest_1510 0.23 +0.7 1,610,264 + Psest_1510 0.30 +0.6 1,610,264 + Psest_1510 0.30 +0.0 1,610,264 + Psest_1510 0.30 +2.0 1,610,264 + Psest_1510 0.30 +0.0 1,610,265 - Psest_1510 0.30 +0.7 1,610,265 - Psest_1510 0.30 +0.8
Or see this region's nucleotide sequence