Experiment: Def Cisplatin 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1276 and Psest_1277 are separated by 287 nucleotides Psest_1277 and Psest_1278 are separated by 71 nucleotides Psest_1278 and Psest_1279 are separated by 19 nucleotides Psest_1279 and Psest_1280 are separated by 81 nucleotides
Psest_1276: Psest_1276 - Zn-dependent alcohol dehydrogenases, at 1,379,180 to 1,380,235
_1276
Psest_1277: Psest_1277 - 2-isopropylmalate synthase, yeast type, at 1,380,523 to 1,382,193
_1277
Psest_1278: Psest_1278 - hypothetical protein, at 1,382,265 to 1,382,438
_1278
Psest_1279: Psest_1279 - hypothetical protein, at 1,382,458 to 1,382,841
_1279
Psest_1280: Psest_1280 - TonB-dependent copper receptor, at 1,382,923 to 1,385,130
_1280
Position (kb)
1380
1381
1382
1383 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1379.742 kb on + strand, within Psest_1276 at 1379.743 kb on - strand, within Psest_1276 at 1379.743 kb on - strand, within Psest_1276 at 1379.814 kb on + strand, within Psest_1276 at 1379.814 kb on + strand, within Psest_1276 at 1379.815 kb on - strand, within Psest_1276 at 1379.815 kb on - strand, within Psest_1276 at 1379.815 kb on - strand, within Psest_1276 at 1379.889 kb on + strand, within Psest_1276 at 1379.889 kb on + strand, within Psest_1276 at 1379.889 kb on + strand, within Psest_1276 at 1379.889 kb on + strand, within Psest_1276 at 1379.889 kb on + strand, within Psest_1276 at 1379.889 kb on + strand, within Psest_1276 at 1379.889 kb on + strand, within Psest_1276 at 1379.890 kb on - strand, within Psest_1276 at 1379.890 kb on - strand, within Psest_1276 at 1380.067 kb on - strand, within Psest_1276 at 1380.159 kb on - strand at 1380.159 kb on - strand at 1380.278 kb on - strand at 1380.471 kb on + strand at 1380.658 kb on - strand at 1380.659 kb on + strand at 1380.659 kb on + strand at 1380.659 kb on + strand at 1380.659 kb on + strand at 1380.659 kb on + strand at 1380.659 kb on + strand at 1380.659 kb on + strand at 1380.659 kb on + strand at 1380.659 kb on + strand at 1380.660 kb on - strand at 1380.660 kb on - strand at 1380.660 kb on - strand at 1380.660 kb on - strand at 1380.660 kb on - strand at 1380.864 kb on + strand, within Psest_1277 at 1380.864 kb on + strand, within Psest_1277 at 1380.865 kb on - strand, within Psest_1277 at 1380.865 kb on - strand, within Psest_1277 at 1380.865 kb on - strand, within Psest_1277 at 1380.867 kb on - strand, within Psest_1277 at 1380.867 kb on - strand, within Psest_1277 at 1380.887 kb on + strand, within Psest_1277 at 1380.887 kb on + strand, within Psest_1277 at 1380.888 kb on - strand, within Psest_1277 at 1380.908 kb on + strand, within Psest_1277 at 1380.908 kb on + strand, within Psest_1277 at 1380.908 kb on + strand, within Psest_1277 at 1380.909 kb on - strand, within Psest_1277 at 1380.909 kb on - strand, within Psest_1277 at 1381.007 kb on + strand, within Psest_1277 at 1381.077 kb on - strand, within Psest_1277 at 1381.077 kb on - strand, within Psest_1277 at 1381.112 kb on + strand, within Psest_1277 at 1381.214 kb on + strand, within Psest_1277 at 1381.214 kb on + strand, within Psest_1277 at 1381.215 kb on - strand, within Psest_1277 at 1381.215 kb on - strand, within Psest_1277 at 1381.316 kb on + strand, within Psest_1277 at 1381.316 kb on + strand, within Psest_1277 at 1381.316 kb on + strand, within Psest_1277 at 1381.316 kb on + strand, within Psest_1277 at 1381.316 kb on + strand, within Psest_1277 at 1381.316 kb on + strand, within Psest_1277 at 1381.316 kb on + strand, within Psest_1277 at 1381.316 kb on + strand, within Psest_1277 at 1381.316 kb on + strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.317 kb on - strand, within Psest_1277 at 1381.471 kb on + strand, within Psest_1277 at 1381.472 kb on - strand, within Psest_1277 at 1381.523 kb on + strand, within Psest_1277 at 1381.523 kb on + strand, within Psest_1277 at 1381.523 kb on + strand, within Psest_1277 at 1381.523 kb on + strand, within Psest_1277 at 1381.523 kb on + strand, within Psest_1277 at 1381.524 kb on - strand, within Psest_1277 at 1381.524 kb on - strand, within Psest_1277 at 1381.524 kb on - strand, within Psest_1277 at 1381.524 kb on - strand, within Psest_1277 at 1381.528 kb on - strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.805 kb on + strand, within Psest_1277 at 1381.806 kb on - strand, within Psest_1277 at 1381.806 kb on - strand, within Psest_1277 at 1381.806 kb on - strand, within Psest_1277 at 1381.806 kb on - strand, within Psest_1277 at 1381.806 kb on - strand, within Psest_1277 at 1381.806 kb on - strand, within Psest_1277 at 1381.806 kb on - strand, within Psest_1277 at 1381.806 kb on - strand, within Psest_1277 at 1382.459 kb on + strand at 1382.460 kb on - strand at 1382.517 kb on + strand, within Psest_1279 at 1382.518 kb on - strand, within Psest_1279 at 1382.518 kb on - strand, within Psest_1279 at 1382.518 kb on - strand, within Psest_1279 at 1382.566 kb on + strand, within Psest_1279 at 1382.566 kb on + strand, within Psest_1279 at 1382.566 kb on + strand, within Psest_1279 at 1382.567 kb on - strand, within Psest_1279 at 1382.567 kb on - strand, within Psest_1279 at 1382.923 kb on - strand at 1382.935 kb on - strand at 1382.935 kb on - strand at 1383.117 kb on + strand at 1383.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cisplatin 0.0002 mg/ml remove 1,379,742 + Psest_1276 0.53 -0.7 1,379,743 - Psest_1276 0.53 +0.1 1,379,743 - Psest_1276 0.53 -0.2 1,379,814 + Psest_1276 0.60 -0.2 1,379,814 + Psest_1276 0.60 -0.4 1,379,815 - Psest_1276 0.60 +0.4 1,379,815 - Psest_1276 0.60 +0.2 1,379,815 - Psest_1276 0.60 -0.2 1,379,889 + Psest_1276 0.67 -0.3 1,379,889 + Psest_1276 0.67 +0.4 1,379,889 + Psest_1276 0.67 -0.5 1,379,889 + Psest_1276 0.67 -2.0 1,379,889 + Psest_1276 0.67 -0.4 1,379,889 + Psest_1276 0.67 -0.1 1,379,889 + Psest_1276 0.67 +0.8 1,379,890 - Psest_1276 0.67 -0.4 1,379,890 - Psest_1276 0.67 -0.3 1,380,067 - Psest_1276 0.84 -0.3 1,380,159 - +0.4 1,380,159 - +0.3 1,380,278 - -0.1 1,380,471 + -0.6 1,380,658 - +0.6 1,380,659 + -0.8 1,380,659 + -1.5 1,380,659 + -1.0 1,380,659 + -0.3 1,380,659 + -0.4 1,380,659 + -0.3 1,380,659 + -0.3 1,380,659 + -1.6 1,380,659 + +0.4 1,380,660 - -2.6 1,380,660 - +0.2 1,380,660 - -0.4 1,380,660 - -0.6 1,380,660 - +0.2 1,380,864 + Psest_1277 0.20 -0.6 1,380,864 + Psest_1277 0.20 +0.4 1,380,865 - Psest_1277 0.20 +0.1 1,380,865 - Psest_1277 0.20 +0.2 1,380,865 - Psest_1277 0.20 +1.0 1,380,867 - Psest_1277 0.21 -0.8 1,380,867 - Psest_1277 0.21 +0.2 1,380,887 + Psest_1277 0.22 -1.5 1,380,887 + Psest_1277 0.22 +0.5 1,380,888 - Psest_1277 0.22 -2.0 1,380,908 + Psest_1277 0.23 -2.1 1,380,908 + Psest_1277 0.23 -1.2 1,380,908 + Psest_1277 0.23 -0.6 1,380,909 - Psest_1277 0.23 -1.1 1,380,909 - Psest_1277 0.23 -0.9 1,381,007 + Psest_1277 0.29 -0.3 1,381,077 - Psest_1277 0.33 -1.6 1,381,077 - Psest_1277 0.33 -1.0 1,381,112 + Psest_1277 0.35 -1.7 1,381,214 + Psest_1277 0.41 -0.3 1,381,214 + Psest_1277 0.41 -0.2 1,381,215 - Psest_1277 0.41 -2.8 1,381,215 - Psest_1277 0.41 +0.0 1,381,316 + Psest_1277 0.47 -0.4 1,381,316 + Psest_1277 0.47 +0.7 1,381,316 + Psest_1277 0.47 -1.0 1,381,316 + Psest_1277 0.47 -0.7 1,381,316 + Psest_1277 0.47 -2.2 1,381,316 + Psest_1277 0.47 -1.6 1,381,316 + Psest_1277 0.47 -1.5 1,381,316 + Psest_1277 0.47 -2.2 1,381,316 + Psest_1277 0.47 -1.6 1,381,317 - Psest_1277 0.48 -1.4 1,381,317 - Psest_1277 0.48 -0.7 1,381,317 - Psest_1277 0.48 -1.4 1,381,317 - Psest_1277 0.48 -0.4 1,381,317 - Psest_1277 0.48 -0.7 1,381,317 - Psest_1277 0.48 -0.6 1,381,317 - Psest_1277 0.48 -1.7 1,381,317 - Psest_1277 0.48 -1.3 1,381,317 - Psest_1277 0.48 -0.2 1,381,317 - Psest_1277 0.48 +0.4 1,381,317 - Psest_1277 0.48 -0.7 1,381,317 - Psest_1277 0.48 -2.4 1,381,317 - Psest_1277 0.48 -0.2 1,381,471 + Psest_1277 0.57 -0.4 1,381,472 - Psest_1277 0.57 -0.6 1,381,523 + Psest_1277 0.60 -2.3 1,381,523 + Psest_1277 0.60 -1.0 1,381,523 + Psest_1277 0.60 -0.2 1,381,523 + Psest_1277 0.60 -0.7 1,381,523 + Psest_1277 0.60 +0.1 1,381,524 - Psest_1277 0.60 -1.5 1,381,524 - Psest_1277 0.60 -0.1 1,381,524 - Psest_1277 0.60 -1.2 1,381,524 - Psest_1277 0.60 -0.6 1,381,528 - Psest_1277 0.60 -0.5 1,381,805 + Psest_1277 0.77 -0.6 1,381,805 + Psest_1277 0.77 -1.8 1,381,805 + Psest_1277 0.77 +0.2 1,381,805 + Psest_1277 0.77 -2.7 1,381,805 + Psest_1277 0.77 -1.1 1,381,805 + Psest_1277 0.77 -0.4 1,381,805 + Psest_1277 0.77 -0.3 1,381,805 + Psest_1277 0.77 -1.4 1,381,805 + Psest_1277 0.77 -0.8 1,381,805 + Psest_1277 0.77 -0.1 1,381,806 - Psest_1277 0.77 -0.1 1,381,806 - Psest_1277 0.77 +0.3 1,381,806 - Psest_1277 0.77 +0.0 1,381,806 - Psest_1277 0.77 -0.9 1,381,806 - Psest_1277 0.77 -0.6 1,381,806 - Psest_1277 0.77 -1.1 1,381,806 - Psest_1277 0.77 -1.8 1,381,806 - Psest_1277 0.77 -0.7 1,382,459 + +0.0 1,382,460 - +0.2 1,382,517 + Psest_1279 0.15 +0.2 1,382,518 - Psest_1279 0.16 +0.2 1,382,518 - Psest_1279 0.16 +0.5 1,382,518 - Psest_1279 0.16 -1.1 1,382,566 + Psest_1279 0.28 -0.7 1,382,566 + Psest_1279 0.28 +1.0 1,382,566 + Psest_1279 0.28 -0.9 1,382,567 - Psest_1279 0.28 +0.2 1,382,567 - Psest_1279 0.28 +0.4 1,382,923 - -0.0 1,382,935 - +0.6 1,382,935 - +0.6 1,383,117 + -2.3 1,383,118 - +1.9
Or see this region's nucleotide sequence