Strain Fitness in Shewanella oneidensis MR-1 around SO0181

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0180 and SO0181 are separated by 80 nucleotidesSO0181 and SO0182 are separated by 111 nucleotidesSO0182 and SO0183 overlap by 4 nucleotidesSO0183 and SO0184 are separated by 85 nucleotides SO0180: SO0180 - hypothetical protein (NCBI ptt file), at 184,305 to 186,314 SO0180 SO0181: SO0181 - hypothetical protein (NCBI ptt file), at 186,395 to 187,441 SO0181 SO0182: SO0182 - hypothetical protein (NCBI ptt file), at 187,553 to 187,840 SO0182 SO0183: SO0183 - acetyltransferase, GNAT family (NCBI ptt file), at 187,837 to 188,319 SO0183 SO0184: SO0184 - hypothetical microcystin dependent protein (NCBI ptt file), at 188,405 to 188,956 SO0184 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2 3at 185.399 kb on + strand, within SO0180at 185.399 kb on + strand, within SO0180at 185.399 kb on + strand, within SO0180at 185.399 kb on + strand, within SO0180at 185.407 kb on - strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.471 kb on - strand, within SO0180at 185.471 kb on - strand, within SO0180at 185.484 kb on - strand, within SO0180at 185.677 kb on - strand, within SO0180at 185.677 kb on - strand, within SO0180at 185.762 kb on + strand, within SO0180at 185.770 kb on - strand, within SO0180at 185.770 kb on - strand, within SO0180at 185.770 kb on - strand, within SO0180at 185.770 kb on - strand, within SO0180at 185.924 kb on + strand, within SO0180at 185.952 kb on - strand, within SO0180at 186.011 kb on + strand, within SO0180at 186.011 kb on + strand, within SO0180at 186.097 kb on + strand, within SO0180at 186.164 kb on + strandat 186.172 kb on - strandat 186.239 kb on - strandat 186.247 kb on - strandat 186.264 kb on + strandat 186.279 kb on + strandat 186.372 kb on + strandat 186.380 kb on - strandat 186.392 kb on + strandat 186.392 kb on + strandat 186.399 kb on - strandat 186.399 kb on - strandat 186.493 kb on + strandat 186.498 kb on + strandat 186.506 kb on - strand, within SO0181at 186.506 kb on - strand, within SO0181at 186.506 kb on - strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.674 kb on + strand, within SO0181at 186.682 kb on - strand, within SO0181at 186.761 kb on + strand, within SO0181at 186.785 kb on - strand, within SO0181at 186.785 kb on - strandat 186.799 kb on - strand, within SO0181at 186.808 kb on + strand, within SO0181at 186.820 kb on - strand, within SO0181at 186.844 kb on - strand, within SO0181at 186.847 kb on + strand, within SO0181at 186.861 kb on - strand, within SO0181at 186.910 kb on + strand, within SO0181at 186.923 kb on - strand, within SO0181at 186.995 kb on + strand, within SO0181at 186.995 kb on - strand, within SO0181at 187.039 kb on - strand, within SO0181at 187.151 kb on + strand, within SO0181at 187.151 kb on - strand, within SO0181at 187.168 kb on + strand, within SO0181at 187.176 kb on + strand, within SO0181at 187.190 kb on - strand, within SO0181at 187.205 kb on - strand, within SO0181at 187.205 kb on - strand, within SO0181at 187.218 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.283 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.321 kb on + strand, within SO0181at 187.342 kb on - strandat 187.347 kb on - strandat 187.350 kb on - strandat 187.350 kb on - strandat 187.399 kb on + strandat 187.407 kb on - strandat 187.623 kb on - strand, within SO0182at 187.658 kb on - strand, within SO0182at 187.662 kb on + strand, within SO0182at 187.672 kb on - strand, within SO0182at 187.673 kb on + strand, within SO0182at 187.689 kb on + strand, within SO0182at 187.689 kb on + strand, within SO0182at 187.689 kb on + strand, within SO0182at 187.697 kb on + strand, within SO0182at 187.697 kb on - strand, within SO0182at 187.697 kb on - strand, within SO0182at 187.699 kb on + strand, within SO0182at 187.699 kb on + strand, within SO0182at 187.707 kb on - strand, within SO0182at 187.707 kb on - strand, within SO0182at 187.707 kb on - strand, within SO0182at 187.730 kb on + strand, within SO0182at 187.730 kb on + strand, within SO0182at 187.730 kb on + strand, within SO0182at 187.738 kb on - strand, within SO0182at 187.738 kb on - strand, within SO0182at 187.756 kb on + strand, within SO0182at 187.760 kb on + strand, within SO0182at 187.835 kb on + strandat 187.835 kb on + strandat 187.835 kb on + strandat 187.835 kb on + strandat 187.858 kb on - strandat 187.860 kb on + strandat 187.860 kb on + strandat 187.860 kb on + strandat 187.867 kb on - strandat 187.867 kb on - strandat 187.867 kb on - strandat 187.867 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.868 kb on - strandat 187.917 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.922 kb on + strand, within SO0183at 187.924 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.927 kb on + strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.930 kb on - strand, within SO0183at 187.932 kb on - strandat 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 187.935 kb on - strand, within SO0183at 188.027 kb on + strand, within SO0183at 188.038 kb on + strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.138 kb on + strand, within SO0183at 188.139 kb on - strand, within SO0183at 188.139 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.144 kb on - strand, within SO0183at 188.147 kb on - strand, within SO0183at 188.151 kb on + strand, within SO0183at 188.157 kb on - strand, within SO0183at 188.160 kb on - strand, within SO0183at 188.203 kb on + strand, within SO0183at 188.234 kb on + strand, within SO0183at 188.242 kb on - strand, within SO0183at 188.243 kb on + strand, within SO0183at 188.265 kb on + strand, within SO0183at 188.290 kb on + strandat 188.315 kb on + strandat 188.323 kb on - strandat 188.323 kb on - strandat 188.323 kb on - strandat 188.329 kb on - strandat 188.331 kb on + strandat 188.388 kb on + strandat 188.388 kb on + strandat 188.388 kb on + strandat 188.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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185,399 + SO0180 0.54 +0.1
185,399 + SO0180 0.54 +0.7
185,399 + SO0180 0.54 -1.3
185,399 + SO0180 0.54 -0.2
185,407 - SO0180 0.55 +0.1
185,463 + SO0180 0.58 -0.8
185,463 + SO0180 0.58 -0.2
185,463 + SO0180 0.58 +0.0
185,463 + SO0180 0.58 -0.4
185,463 + SO0180 0.58 +0.9
185,471 - SO0180 0.58 +2.2
185,471 - SO0180 0.58 -0.2
185,484 - SO0180 0.59 -0.1
185,677 - SO0180 0.68 -0.5
185,677 - SO0180 0.68 +0.7
185,762 + SO0180 0.72 +0.6
185,770 - SO0180 0.73 +1.0
185,770 - SO0180 0.73 +0.3
185,770 - SO0180 0.73 +0.2
185,770 - SO0180 0.73 +0.1
185,924 + SO0180 0.81 -0.1
185,952 - SO0180 0.82 +0.0
186,011 + SO0180 0.85 +0.1
186,011 + SO0180 0.85 -1.7
186,097 + SO0180 0.89 +0.5
186,164 + +0.2
186,172 - +0.2
186,239 - -1.3
186,247 - -0.7
186,264 + -0.0
186,279 + -0.4
186,372 + -0.4
186,380 - +0.2
186,392 + +0.8
186,392 + +0.0
186,399 - -0.5
186,399 - +0.2
186,493 + +0.3
186,498 + -0.6
186,506 - SO0181 0.11 -0.3
186,506 - SO0181 0.11 +0.7
186,506 - SO0181 0.11 +0.4
186,566 + SO0181 0.16 +0.3
186,566 + SO0181 0.16 -0.0
186,566 + SO0181 0.16 +0.7
186,566 + SO0181 0.16 +0.2
186,574 - SO0181 0.17 -0.1
186,574 - SO0181 0.17 -0.1
186,574 - SO0181 0.17 +0.2
186,574 - SO0181 0.17 -0.5
186,574 - SO0181 0.17 -0.9
186,574 - SO0181 0.17 +0.6
186,574 - SO0181 0.17 +0.3
186,574 - SO0181 0.17 +0.5
186,674 + SO0181 0.27 +0.1
186,682 - SO0181 0.27 +0.1
186,761 + SO0181 0.35 +0.6
186,785 - SO0181 0.37 +0.4
186,785 - +3.0
186,799 - SO0181 0.39 +2.4
186,808 + SO0181 0.39 +0.3
186,820 - SO0181 0.41 -0.5
186,844 - SO0181 0.43 -0.3
186,847 + SO0181 0.43 +0.3
186,861 - SO0181 0.45 +0.1
186,910 + SO0181 0.49 -1.4
186,923 - SO0181 0.50 +0.2
186,995 + SO0181 0.57 -0.0
186,995 - SO0181 0.57 +0.0
187,039 - SO0181 0.62 -0.5
187,151 + SO0181 0.72 +0.9
187,151 - SO0181 0.72 -0.1
187,168 + SO0181 0.74 +0.3
187,176 + SO0181 0.75 -0.0
187,190 - SO0181 0.76 +0.5
187,205 - SO0181 0.77 -0.3
187,205 - SO0181 0.77 -0.0
187,218 + SO0181 0.79 +0.1
187,276 + SO0181 0.84 +0.5
187,276 + SO0181 0.84 -0.2
187,276 + SO0181 0.84 -0.0
187,276 + SO0181 0.84 +0.3
187,276 + SO0181 0.84 -0.2
187,276 + SO0181 0.84 +0.6
187,276 + SO0181 0.84 +1.4
187,283 - SO0181 0.85 +0.6
187,284 - SO0181 0.85 +0.5
187,284 - SO0181 0.85 +0.1
187,284 - SO0181 0.85 +0.1
187,321 + SO0181 0.88 +1.5
187,321 + SO0181 0.88 +0.2
187,321 + SO0181 0.88 +0.2
187,321 + SO0181 0.88 +0.3
187,321 + SO0181 0.88 +0.8
187,342 - +0.2
187,347 - +0.2
187,350 - -1.0
187,350 - -0.9
187,399 + -0.0
187,407 - +0.3
187,623 - SO0182 0.24 -1.1
187,658 - SO0182 0.36 +0.0
187,662 + SO0182 0.38 +0.2
187,672 - SO0182 0.41 -0.2
187,673 + SO0182 0.42 -1.3
187,689 + SO0182 0.47 -0.5
187,689 + SO0182 0.47 -0.9
187,689 + SO0182 0.47 +0.2
187,697 + SO0182 0.50 -0.2
187,697 - SO0182 0.50 -0.1
187,697 - SO0182 0.50 +0.0
187,699 + SO0182 0.51 +0.1
187,699 + SO0182 0.51 -0.1
187,707 - SO0182 0.53 +0.0
187,707 - SO0182 0.53 -2.1
187,707 - SO0182 0.53 +0.3
187,730 + SO0182 0.61 +0.3
187,730 + SO0182 0.61 +0.2
187,730 + SO0182 0.61 +0.2
187,738 - SO0182 0.64 -0.3
187,738 - SO0182 0.64 +0.3
187,756 + SO0182 0.70 -0.5
187,760 + SO0182 0.72 -2.2
187,835 + +0.3
187,835 + -0.1
187,835 + -0.4
187,835 + +0.1
187,858 - +0.2
187,860 + +0.3
187,860 + +0.9
187,860 + -0.1
187,867 - +0.2
187,867 - +0.5
187,867 - +0.6
187,867 - -0.3
187,868 - -0.2
187,868 - -0.0
187,868 - +0.5
187,868 - -0.0
187,868 - -0.1
187,868 - +0.2
187,868 - -0.3
187,868 - +0.2
187,868 - +1.4
187,917 + SO0183 0.17 -0.2
187,922 + SO0183 0.18 -0.4
187,922 + SO0183 0.18 -1.2
187,922 + SO0183 0.18 +0.3
187,922 + SO0183 0.18 +0.1
187,922 + SO0183 0.18 +0.2
187,922 + SO0183 0.18 -0.1
187,922 + SO0183 0.18 -1.0
187,922 + SO0183 0.18 -0.1
187,922 + SO0183 0.18 +0.1
187,922 + SO0183 0.18 +0.2
187,924 + SO0183 0.18 -0.1
187,927 + SO0183 0.19 -0.8
187,927 + SO0183 0.19 +0.2
187,927 + SO0183 0.19 +0.7
187,927 + SO0183 0.19 +0.6
187,930 - SO0183 0.19 +0.1
187,930 - SO0183 0.19 -1.6
187,930 - SO0183 0.19 +0.2
187,930 - SO0183 0.19 -0.5
187,930 - SO0183 0.19 -0.1
187,930 - SO0183 0.19 -0.7
187,930 - SO0183 0.19 +0.4
187,930 - SO0183 0.19 +0.5
187,930 - SO0183 0.19 +0.4
187,932 - +2.0
187,935 - SO0183 0.20 -0.1
187,935 - SO0183 0.20 -0.0
187,935 - SO0183 0.20 -0.2
187,935 - SO0183 0.20 +0.3
187,935 - SO0183 0.20 +0.3
188,027 + SO0183 0.39 +0.3
188,038 + SO0183 0.42 +0.4
188,046 - SO0183 0.43 -1.2
188,046 - SO0183 0.43 -0.1
188,046 - SO0183 0.43 -0.9
188,129 + SO0183 0.60 +0.1
188,129 + SO0183 0.60 +1.4
188,129 + SO0183 0.60 -0.4
188,129 + SO0183 0.60 +0.4
188,129 + SO0183 0.60 -0.3
188,129 + SO0183 0.60 +0.3
188,129 + SO0183 0.60 -1.9
188,129 + SO0183 0.60 -0.0
188,129 + SO0183 0.60 +0.5
188,129 + SO0183 0.60 -0.4
188,129 + SO0183 0.60 +1.2
188,129 + SO0183 0.60 +0.2
188,129 + SO0183 0.60 -0.5
188,129 + SO0183 0.60 +0.8
188,129 + SO0183 0.60 -0.6
188,129 + SO0183 0.60 -0.1
188,129 + SO0183 0.60 +0.1
188,129 + SO0183 0.60 -0.4
188,129 + SO0183 0.60 -0.4
188,129 + SO0183 0.60 -0.2
188,137 - SO0183 0.62 -0.6
188,137 - SO0183 0.62 -0.9
188,137 - SO0183 0.62 +0.4
188,137 - SO0183 0.62 -0.6
188,137 - SO0183 0.62 +0.8
188,137 - SO0183 0.62 +0.5
188,137 - SO0183 0.62 -0.0
188,137 - SO0183 0.62 +0.3
188,137 - SO0183 0.62 +0.0
188,137 - SO0183 0.62 -0.0
188,138 + SO0183 0.62 -0.1
188,139 - SO0183 0.63 +0.0
188,139 - SO0183 0.63 +0.1
188,142 - SO0183 0.63 -0.1
188,142 - SO0183 0.63 -2.0
188,142 - SO0183 0.63 -0.4
188,144 - SO0183 0.64 +0.9
188,147 - SO0183 0.64 -0.3
188,151 + SO0183 0.65 +0.2
188,157 - SO0183 0.66 -0.2
188,160 - SO0183 0.67 -0.3
188,203 + SO0183 0.76 -0.5
188,234 + SO0183 0.82 -0.1
188,242 - SO0183 0.84 +0.0
188,243 + SO0183 0.84 +1.3
188,265 + SO0183 0.89 -0.4
188,290 + -0.1
188,315 + +0.1
188,323 - -0.0
188,323 - -0.6
188,323 - -0.2
188,329 - -0.8
188,331 + +0.1
188,388 + +0.4
188,388 + -0.4
188,388 + -0.4
188,396 - -0.4

Or see this region's nucleotide sequence