Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0865

Experiment: Def Thallium(I) acetate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0864 and Psest_0865 are separated by 11 nucleotidesPsest_0865 and Psest_0866 are separated by 39 nucleotides Psest_0864: Psest_0864 - maltose ABC transporter, permease component 1 (MalF) (from data), at 938,104 to 939,669 _0864 Psest_0865: Psest_0865 - maltose ABC transporter, permease component 2 (MalG) (from data), at 939,681 to 940,571 _0865 Psest_0866: Psest_0866 - ATP-dependent transcriptional regulator, at 940,611 to 943,421 _0866 Position (kb) 939 940 941Strain fitness (log2 ratio) -2 -1 0 1 2 3at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 939.103 kb on + strand, within Psest_0864at 939.277 kb on + strand, within Psest_0864at 939.277 kb on + strand, within Psest_0864at 939.278 kb on - strand, within Psest_0864at 939.278 kb on - strand, within Psest_0864at 939.456 kb on - strand, within Psest_0864at 939.538 kb on + strandat 939.538 kb on + strandat 939.538 kb on + strandat 939.538 kb on + strandat 939.539 kb on - strandat 939.539 kb on - strandat 939.539 kb on - strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.667 kb on + strandat 939.667 kb on + strandat 939.667 kb on + strandat 939.667 kb on + strandat 939.668 kb on - strandat 939.668 kb on - strandat 939.668 kb on - strandat 939.668 kb on - strandat 940.016 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.199 kb on + strand, within Psest_0865at 940.199 kb on + strand, within Psest_0865at 940.199 kb on + strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.218 kb on + strand, within Psest_0865at 940.219 kb on - strand, within Psest_0865at 940.219 kb on - strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.452 kb on + strand, within Psest_0865at 940.452 kb on + strand, within Psest_0865at 940.452 kb on + strand, within Psest_0865at 940.453 kb on - strand, within Psest_0865at 940.453 kb on - strand, within Psest_0865at 940.577 kb on + strandat 940.577 kb on + strandat 940.795 kb on + strandat 940.795 kb on + strandat 941.454 kb on + strand, within Psest_0866at 941.454 kb on + strand, within Psest_0866at 941.454 kb on + strand, within Psest_0866at 941.454 kb on + strand, within Psest_0866

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Thallium(I) acetate 0.125 mg/ml
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938,857 + Psest_0864 0.48 +2.0
938,857 + Psest_0864 0.48 +2.8
938,857 + Psest_0864 0.48 -0.2
938,857 + Psest_0864 0.48 -0.1
938,857 + Psest_0864 0.48 +0.9
938,857 + Psest_0864 0.48 +0.9
938,857 + Psest_0864 0.48 -0.2
938,858 - Psest_0864 0.48 +2.1
938,858 - Psest_0864 0.48 -0.1
938,858 - Psest_0864 0.48 -0.0
938,858 - Psest_0864 0.48 +0.2
938,858 - Psest_0864 0.48 +0.5
939,103 + Psest_0864 0.64 +1.6
939,277 + Psest_0864 0.75 -0.8
939,277 + Psest_0864 0.75 -0.8
939,278 - Psest_0864 0.75 +1.4
939,278 - Psest_0864 0.75 +0.6
939,456 - Psest_0864 0.86 +1.6
939,538 + -0.1
939,538 + +1.8
939,538 + -0.0
939,538 + +1.2
939,539 - +1.4
939,539 - +0.5
939,539 - -0.2
939,665 + +0.2
939,665 + +0.5
939,665 + -1.6
939,665 + -0.2
939,665 + -0.2
939,665 + +0.6
939,665 + +0.5
939,665 + +0.9
939,665 + +1.8
939,666 - -0.8
939,666 - -0.4
939,666 - +0.9
939,666 - -0.9
939,666 - +0.4
939,666 - -0.0
939,666 - +0.7
939,666 - -1.1
939,667 + +0.7
939,667 + +0.3
939,667 + +2.1
939,667 + -1.0
939,668 - -0.8
939,668 - +0.8
939,668 - +0.7
939,668 - -0.4
940,016 + Psest_0865 0.38 +0.9
940,101 + Psest_0865 0.47 +2.7
940,101 + Psest_0865 0.47 +2.2
940,101 + Psest_0865 0.47 +1.2
940,101 + Psest_0865 0.47 +0.8
940,101 + Psest_0865 0.47 +1.2
940,101 + Psest_0865 0.47 +1.6
940,101 + Psest_0865 0.47 -1.1
940,101 + Psest_0865 0.47 -0.2
940,102 - Psest_0865 0.47 -0.6
940,102 - Psest_0865 0.47 +0.8
940,102 - Psest_0865 0.47 +0.4
940,102 - Psest_0865 0.47 -1.4
940,102 - Psest_0865 0.47 +1.5
940,102 - Psest_0865 0.47 -2.2
940,102 - Psest_0865 0.47 -0.2
940,102 - Psest_0865 0.47 +0.4
940,102 - Psest_0865 0.47 +0.5
940,199 + Psest_0865 0.58 +1.2
940,199 + Psest_0865 0.58 +0.0
940,199 + Psest_0865 0.58 +0.2
940,200 - Psest_0865 0.58 +0.8
940,200 - Psest_0865 0.58 -0.4
940,200 - Psest_0865 0.58 -0.0
940,200 - Psest_0865 0.58 +0.2
940,200 - Psest_0865 0.58 +0.7
940,218 + Psest_0865 0.60 +1.2
940,219 - Psest_0865 0.60 +0.5
940,219 - Psest_0865 0.60 -1.1
940,434 + Psest_0865 0.85 +1.2
940,434 + Psest_0865 0.85 +0.2
940,434 + Psest_0865 0.85 -1.8
940,434 + Psest_0865 0.85 +0.6
940,434 + Psest_0865 0.85 +0.6
940,434 + Psest_0865 0.85 +1.2
940,434 + Psest_0865 0.85 +0.2
940,434 + Psest_0865 0.85 +1.2
940,434 + Psest_0865 0.85 +0.6
940,435 - Psest_0865 0.85 -1.8
940,435 - Psest_0865 0.85 +1.1
940,435 - Psest_0865 0.85 -0.1
940,435 - Psest_0865 0.85 -0.3
940,435 - Psest_0865 0.85 +0.5
940,452 + Psest_0865 0.87 +1.2
940,452 + Psest_0865 0.87 +0.5
940,452 + Psest_0865 0.87 +0.6
940,453 - Psest_0865 0.87 +2.4
940,453 - Psest_0865 0.87 -0.1
940,577 + +3.2
940,577 + +1.5
940,795 + -0.3
940,795 + +0.4
941,454 + Psest_0866 0.30 +0.2
941,454 + Psest_0866 0.30 -0.8
941,454 + Psest_0866 0.30 +0.4
941,454 + Psest_0866 0.30 +1.4

Or see this region's nucleotide sequence