Experiment: Def Thallium(I) acetate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0568 and Psest_0569 are separated by 21 nucleotides Psest_0569 and Psest_0570 are separated by 174 nucleotides Psest_0570 and Psest_0571 are separated by 160 nucleotides
Psest_0568: Psest_0568 - pseudouridine synthase, at 625,010 to 625,639
_0568
Psest_0569: Psest_0569 - Protein of unknown function (DUF2788)., at 625,661 to 625,879
_0569
Psest_0570: Psest_0570 - hypothetical protein, at 626,054 to 626,446
_0570
Psest_0571: Psest_0571 - Transcriptional regulators, at 626,607 to 627,086
_0571
Position (kb) 626
627 Strain fitness (log2 ratio) -2
-1
0
1
2 at 625.058 kb on - strand at 625.307 kb on + strand, within Psest_0568 at 625.308 kb on - strand, within Psest_0568 at 625.308 kb on - strand, within Psest_0568 at 625.308 kb on - strand, within Psest_0568 at 625.308 kb on - strand, within Psest_0568 at 625.428 kb on + strand, within Psest_0568 at 625.429 kb on - strand, within Psest_0568 at 625.638 kb on - strand at 625.944 kb on - strand at 625.944 kb on - strand at 625.944 kb on - strand at 625.945 kb on + strand at 625.945 kb on + strand at 625.945 kb on + strand at 625.945 kb on + strand at 625.945 kb on + strand at 625.946 kb on - strand at 625.946 kb on - strand at 625.946 kb on - strand at 625.946 kb on - strand at 625.946 kb on - strand at 626.160 kb on - strand, within Psest_0570 at 626.181 kb on + strand, within Psest_0570 at 626.181 kb on + strand, within Psest_0570 at 626.181 kb on + strand, within Psest_0570 at 626.182 kb on - strand, within Psest_0570 at 626.197 kb on + strand, within Psest_0570 at 626.373 kb on + strand, within Psest_0570 at 626.373 kb on + strand, within Psest_0570 at 626.373 kb on + strand, within Psest_0570 at 626.373 kb on + strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.374 kb on - strand, within Psest_0570 at 626.415 kb on + strand at 626.416 kb on - strand at 626.558 kb on + strand at 626.559 kb on - strand at 626.560 kb on + strand at 626.560 kb on + strand at 626.560 kb on + strand at 626.560 kb on + strand at 626.560 kb on + strand at 626.561 kb on - strand at 626.561 kb on - strand at 626.582 kb on + strand at 626.582 kb on + strand at 626.764 kb on + strand, within Psest_0571 at 626.765 kb on - strand, within Psest_0571 at 626.881 kb on + strand, within Psest_0571 at 626.939 kb on + strand, within Psest_0571 at 626.940 kb on - strand, within Psest_0571 at 626.940 kb on - strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 627.129 kb on - strand at 627.131 kb on + strand at 627.157 kb on + strand at 627.157 kb on + strand at 627.206 kb on + strand at 627.207 kb on - strand at 627.207 kb on - strand at 627.274 kb on + strand at 627.360 kb on + strand at 627.360 kb on + strand at 627.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Thallium(I) acetate 0.125 mg/ml remove 625,058 - +0.3 625,307 + Psest_0568 0.47 -0.3 625,308 - Psest_0568 0.47 +1.3 625,308 - Psest_0568 0.47 +1.1 625,308 - Psest_0568 0.47 +0.9 625,308 - Psest_0568 0.47 +0.6 625,428 + Psest_0568 0.66 +0.1 625,429 - Psest_0568 0.67 +1.3 625,638 - +0.7 625,944 - -0.5 625,944 - +2.3 625,944 - +1.3 625,945 + -1.3 625,945 + -0.6 625,945 + +0.2 625,945 + -0.3 625,945 + +0.2 625,946 - -0.7 625,946 - +0.5 625,946 - +0.2 625,946 - -1.5 625,946 - +0.9 626,160 - Psest_0570 0.27 +1.8 626,181 + Psest_0570 0.32 -0.9 626,181 + Psest_0570 0.32 +0.6 626,181 + Psest_0570 0.32 -1.5 626,182 - Psest_0570 0.33 -1.0 626,197 + Psest_0570 0.36 +2.1 626,373 + Psest_0570 0.81 +0.3 626,373 + Psest_0570 0.81 +0.3 626,373 + Psest_0570 0.81 +0.3 626,373 + Psest_0570 0.81 -0.1 626,374 - Psest_0570 0.81 +1.9 626,374 - Psest_0570 0.81 +1.3 626,374 - Psest_0570 0.81 +0.9 626,374 - Psest_0570 0.81 +0.8 626,374 - Psest_0570 0.81 -0.3 626,374 - Psest_0570 0.81 +1.7 626,374 - Psest_0570 0.81 +0.9 626,415 + -1.0 626,416 - -1.3 626,558 + -1.3 626,559 - +2.3 626,560 + -0.0 626,560 + -1.2 626,560 + -0.2 626,560 + +0.4 626,560 + -0.7 626,561 - +2.3 626,561 - -0.3 626,582 + +1.9 626,582 + +0.3 626,764 + Psest_0571 0.33 +0.5 626,765 - Psest_0571 0.33 -0.3 626,881 + Psest_0571 0.57 +1.3 626,939 + Psest_0571 0.69 +0.7 626,940 - Psest_0571 0.69 +0.0 626,940 - Psest_0571 0.69 +1.0 626,941 + Psest_0571 0.70 -0.1 626,941 + Psest_0571 0.70 +0.6 626,941 + +1.3 626,941 + Psest_0571 0.70 -0.7 626,941 + Psest_0571 0.70 +0.2 626,941 + Psest_0571 0.70 +0.7 626,941 + Psest_0571 0.70 -2.2 626,941 + Psest_0571 0.70 +0.5 626,942 - Psest_0571 0.70 +0.2 626,942 - Psest_0571 0.70 -1.4 626,942 - Psest_0571 0.70 +2.7 626,942 - Psest_0571 0.70 -1.5 626,942 - Psest_0571 0.70 +0.4 627,129 - +0.6 627,131 + +0.9 627,157 + -1.0 627,157 + +1.1 627,206 + +1.7 627,207 - -0.4 627,207 - -1.0 627,274 + -1.5 627,360 + -0.9 627,360 + +0.1 627,361 - -0.8
Or see this region's nucleotide sequence