Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4060

Experiment: Def Thallium(I) acetate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4058 and Psest_4059 are separated by 257 nucleotidesPsest_4059 and Psest_4060 are separated by 265 nucleotidesPsest_4060 and Psest_4061 are separated by 258 nucleotides Psest_4058: Psest_4058 - Predicted esterase of the alpha/beta hydrolase fold, at 4,230,435 to 4,231,010 _4058 Psest_4059: Psest_4059 - Uncharacterized small protein, at 4,231,268 to 4,231,447 _4059 Psest_4060: Psest_4060 - sulfate/thiosulfate-binding protein, at 4,231,713 to 4,232,711 _4060 Psest_4061: Psest_4061 - sulfate ABC transporter, permease protein CysT, at 4,232,970 to 4,233,785 _4061 Position (kb) 4231 4232 4233Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4231.044 kb on + strandat 4231.045 kb on - strandat 4231.152 kb on - strandat 4231.197 kb on + strandat 4231.197 kb on + strandat 4231.197 kb on + strandat 4231.197 kb on + strandat 4231.198 kb on - strandat 4231.451 kb on + strandat 4231.451 kb on + strandat 4231.451 kb on + strandat 4231.451 kb on + strandat 4231.451 kb on + strandat 4231.451 kb on + strandat 4231.452 kb on - strandat 4231.452 kb on - strandat 4231.452 kb on - strandat 4231.452 kb on - strandat 4231.452 kb on - strandat 4231.455 kb on + strandat 4231.456 kb on - strandat 4231.456 kb on - strandat 4231.456 kb on - strandat 4231.562 kb on - strandat 4231.603 kb on - strandat 4231.654 kb on - strandat 4231.654 kb on - strandat 4231.654 kb on - strandat 4231.654 kb on - strandat 4231.654 kb on - strandat 4231.654 kb on - strandat 4231.654 kb on - strandat 4231.683 kb on - strandat 4231.803 kb on + strandat 4231.804 kb on - strandat 4231.804 kb on - strandat 4231.824 kb on + strand, within Psest_4060at 4231.824 kb on + strand, within Psest_4060at 4231.824 kb on + strand, within Psest_4060at 4231.824 kb on + strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.825 kb on - strand, within Psest_4060at 4231.931 kb on - strand, within Psest_4060at 4232.055 kb on + strand, within Psest_4060at 4232.056 kb on - strand, within Psest_4060at 4232.056 kb on - strand, within Psest_4060at 4232.056 kb on - strand, within Psest_4060at 4232.056 kb on - strand, within Psest_4060at 4232.056 kb on - strand, within Psest_4060at 4232.056 kb on - strand, within Psest_4060at 4232.057 kb on + strand, within Psest_4060at 4232.057 kb on + strand, within Psest_4060at 4232.058 kb on - strand, within Psest_4060at 4232.205 kb on + strand, within Psest_4060at 4232.206 kb on - strand, within Psest_4060at 4232.262 kb on + strand, within Psest_4060at 4232.262 kb on + strand, within Psest_4060at 4232.263 kb on - strand, within Psest_4060at 4232.500 kb on - strand, within Psest_4060at 4232.500 kb on - strand, within Psest_4060at 4232.508 kb on + strand, within Psest_4060at 4232.508 kb on + strand, within Psest_4060at 4232.508 kb on + strand, within Psest_4060at 4232.508 kb on + strand, within Psest_4060at 4232.509 kb on - strand, within Psest_4060at 4232.509 kb on - strand, within Psest_4060at 4232.509 kb on - strand, within Psest_4060at 4232.509 kb on - strand, within Psest_4060at 4232.509 kb on - strand, within Psest_4060at 4232.509 kb on - strand, within Psest_4060at 4232.515 kb on - strand, within Psest_4060at 4232.515 kb on - strand, within Psest_4060at 4232.515 kb on - strand, within Psest_4060at 4232.515 kb on - strand, within Psest_4060at 4232.697 kb on + strandat 4232.697 kb on + strandat 4232.697 kb on + strandat 4232.698 kb on - strandat 4232.698 kb on - strandat 4232.710 kb on - strandat 4232.724 kb on + strandat 4232.805 kb on - strandat 4232.805 kb on - strandat 4232.981 kb on + strandat 4232.982 kb on - strandat 4232.982 kb on - strandat 4232.982 kb on - strandat 4232.982 kb on - strandat 4232.982 kb on - strandat 4232.982 kb on - strandat 4232.992 kb on + strandat 4233.018 kb on + strandat 4233.018 kb on + strandat 4233.018 kb on + strandat 4233.030 kb on + strandat 4233.030 kb on + strandat 4233.030 kb on + strandat 4233.031 kb on - strandat 4233.031 kb on - strandat 4233.031 kb on - strandat 4233.130 kb on + strand, within Psest_4061at 4233.131 kb on - strandat 4233.179 kb on - strand, within Psest_4061at 4233.179 kb on - strand, within Psest_4061at 4233.319 kb on - strand, within Psest_4061at 4233.376 kb on - strand, within Psest_4061at 4233.376 kb on - strand, within Psest_4061at 4233.509 kb on - strand, within Psest_4061at 4233.681 kb on + strand, within Psest_4061at 4233.681 kb on + strand, within Psest_4061at 4233.682 kb on - strand, within Psest_4061at 4233.682 kb on - strand, within Psest_4061

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Thallium(I) acetate 0.125 mg/ml
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4,231,044 + +0.7
4,231,045 - -1.1
4,231,152 - +1.3
4,231,197 + +0.0
4,231,197 + -0.9
4,231,197 + -0.7
4,231,197 + -0.7
4,231,198 - +1.8
4,231,451 + +0.5
4,231,451 + +0.4
4,231,451 + +1.3
4,231,451 + -1.2
4,231,451 + -2.7
4,231,451 + -0.3
4,231,452 - -1.5
4,231,452 - -1.7
4,231,452 - +0.7
4,231,452 - +0.8
4,231,452 - +0.0
4,231,455 + +2.1
4,231,456 - -0.1
4,231,456 - -0.3
4,231,456 - +0.5
4,231,562 - -1.9
4,231,603 - +0.3
4,231,654 - -0.6
4,231,654 - -0.5
4,231,654 - +0.5
4,231,654 - +1.7
4,231,654 - +0.5
4,231,654 - +1.3
4,231,654 - -0.0
4,231,683 - +1.1
4,231,803 + -1.8
4,231,804 - -0.3
4,231,804 - -0.2
4,231,824 + Psest_4060 0.11 -1.1
4,231,824 + Psest_4060 0.11 +0.1
4,231,824 + Psest_4060 0.11 -0.3
4,231,824 + Psest_4060 0.11 +1.0
4,231,825 - Psest_4060 0.11 +0.7
4,231,825 - Psest_4060 0.11 +0.3
4,231,825 - Psest_4060 0.11 +0.7
4,231,825 - Psest_4060 0.11 +0.2
4,231,825 - Psest_4060 0.11 +0.1
4,231,825 - Psest_4060 0.11 +0.4
4,231,825 - Psest_4060 0.11 +1.3
4,231,825 - Psest_4060 0.11 +0.5
4,231,825 - Psest_4060 0.11 +1.3
4,231,825 - Psest_4060 0.11 -1.2
4,231,931 - Psest_4060 0.22 +0.8
4,232,055 + Psest_4060 0.34 +0.5
4,232,056 - Psest_4060 0.34 -1.1
4,232,056 - Psest_4060 0.34 -1.7
4,232,056 - Psest_4060 0.34 +1.1
4,232,056 - Psest_4060 0.34 +0.9
4,232,056 - Psest_4060 0.34 +0.3
4,232,056 - Psest_4060 0.34 +1.0
4,232,057 + Psest_4060 0.34 -0.4
4,232,057 + Psest_4060 0.34 -0.7
4,232,058 - Psest_4060 0.35 -0.3
4,232,205 + Psest_4060 0.49 +2.3
4,232,206 - Psest_4060 0.49 +0.2
4,232,262 + Psest_4060 0.55 +2.1
4,232,262 + Psest_4060 0.55 +2.3
4,232,263 - Psest_4060 0.55 +1.9
4,232,500 - Psest_4060 0.79 +0.8
4,232,500 - Psest_4060 0.79 +0.4
4,232,508 + Psest_4060 0.80 +1.3
4,232,508 + Psest_4060 0.80 +1.5
4,232,508 + Psest_4060 0.80 -0.0
4,232,508 + Psest_4060 0.80 +0.1
4,232,509 - Psest_4060 0.80 +3.0
4,232,509 - Psest_4060 0.80 -0.3
4,232,509 - Psest_4060 0.80 +0.3
4,232,509 - Psest_4060 0.80 -1.5
4,232,509 - Psest_4060 0.80 +0.4
4,232,509 - Psest_4060 0.80 +1.4
4,232,515 - Psest_4060 0.80 +0.3
4,232,515 - Psest_4060 0.80 -1.1
4,232,515 - Psest_4060 0.80 -1.1
4,232,515 - Psest_4060 0.80 +1.1
4,232,697 + +0.2
4,232,697 + +1.3
4,232,697 + +0.5
4,232,698 - +0.3
4,232,698 - +0.2
4,232,710 - -0.8
4,232,724 + +0.1
4,232,805 - -0.7
4,232,805 - +0.3
4,232,981 + +0.1
4,232,982 - +1.3
4,232,982 - +0.1
4,232,982 - +0.1
4,232,982 - -1.1
4,232,982 - -0.2
4,232,982 - +0.9
4,232,992 + +0.0
4,233,018 + -2.5
4,233,018 + +1.3
4,233,018 + +0.1
4,233,030 + -1.5
4,233,030 + -1.5
4,233,030 + -0.3
4,233,031 - +1.3
4,233,031 - +1.0
4,233,031 - +0.3
4,233,130 + Psest_4061 0.20 -0.4
4,233,131 - -0.7
4,233,179 - Psest_4061 0.26 -0.5
4,233,179 - Psest_4061 0.26 +0.5
4,233,319 - Psest_4061 0.43 +1.9
4,233,376 - Psest_4061 0.50 -0.3
4,233,376 - Psest_4061 0.50 +0.0
4,233,509 - Psest_4061 0.66 +0.7
4,233,681 + Psest_4061 0.87 +0.8
4,233,681 + Psest_4061 0.87 +1.8
4,233,682 - Psest_4061 0.87 +0.5
4,233,682 - Psest_4061 0.87 -1.5

Or see this region's nucleotide sequence