Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3012

Experiment: Def Thallium(I) acetate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3010 and Psest_3011 overlap by 4 nucleotidesPsest_3011 and Psest_3012 overlap by 4 nucleotidesPsest_3012 and Psest_3013 overlap by 4 nucleotides Psest_3010: Psest_3010 - cobalamin biosynthesis protein CobD, at 3,198,554 to 3,199,465 _3010 Psest_3011: Psest_3011 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 3,199,462 to 3,200,262 _3011 Psest_3012: Psest_3012 - cob(II)yrinic acid a,c-diamide reductase, at 3,200,259 to 3,200,906 _3012 Psest_3013: Psest_3013 - cobyrinic acid a,c-diamide synthase, at 3,200,903 to 3,202,195 _3013 Position (kb) 3200 3201Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3199.510 kb on + strandat 3199.833 kb on - strand, within Psest_3011at 3200.204 kb on + strandat 3200.205 kb on - strandat 3200.552 kb on + strand, within Psest_3012at 3200.552 kb on + strand, within Psest_3012at 3200.552 kb on + strand, within Psest_3012at 3200.552 kb on + strand, within Psest_3012at 3200.552 kb on + strand, within Psest_3012at 3200.552 kb on + strand, within Psest_3012at 3200.552 kb on + strand, within Psest_3012at 3200.552 kb on + strand, within Psest_3012at 3200.553 kb on - strand, within Psest_3012at 3200.553 kb on - strand, within Psest_3012at 3200.553 kb on - strand, within Psest_3012at 3200.553 kb on - strand, within Psest_3012at 3200.553 kb on - strand, within Psest_3012at 3200.950 kb on - strandat 3200.950 kb on - strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.961 kb on + strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3200.962 kb on - strandat 3201.012 kb on + strandat 3201.013 kb on - strandat 3201.013 kb on - strandat 3201.013 kb on - strandat 3201.013 kb on - strandat 3201.219 kb on + strand, within Psest_3013at 3201.345 kb on + strand, within Psest_3013at 3201.346 kb on - strand, within Psest_3013at 3201.442 kb on - strand, within Psest_3013

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Thallium(I) acetate 0.125 mg/ml
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3,199,510 + +3.3
3,199,833 - Psest_3011 0.46 +0.3
3,200,204 + +0.7
3,200,205 - +1.3
3,200,552 + Psest_3012 0.45 +1.3
3,200,552 + Psest_3012 0.45 -1.5
3,200,552 + Psest_3012 0.45 +0.6
3,200,552 + Psest_3012 0.45 +1.3
3,200,552 + Psest_3012 0.45 +1.9
3,200,552 + Psest_3012 0.45 +2.9
3,200,552 + Psest_3012 0.45 +1.3
3,200,552 + Psest_3012 0.45 +2.6
3,200,553 - Psest_3012 0.45 +2.1
3,200,553 - Psest_3012 0.45 +1.3
3,200,553 - Psest_3012 0.45 +0.3
3,200,553 - Psest_3012 0.45 -1.0
3,200,553 - Psest_3012 0.45 +1.3
3,200,950 - +1.3
3,200,950 - +0.3
3,200,961 + +0.3
3,200,961 + -0.1
3,200,961 + +1.7
3,200,961 + +0.9
3,200,961 + +0.3
3,200,961 + -0.4
3,200,961 + -2.8
3,200,961 + -0.3
3,200,961 + +2.9
3,200,961 + +3.3
3,200,961 + +0.3
3,200,961 + +1.3
3,200,961 + +1.3
3,200,961 + +1.3
3,200,961 + -0.3
3,200,962 - +1.3
3,200,962 - +1.3
3,200,962 - +1.9
3,200,962 - +1.0
3,200,962 - -0.5
3,200,962 - +1.3
3,200,962 - +0.3
3,200,962 - +0.3
3,200,962 - -0.7
3,200,962 - +0.3
3,200,962 - +1.3
3,201,012 + +0.3
3,201,013 - +0.3
3,201,013 - +0.1
3,201,013 - +1.3
3,201,013 - +1.3
3,201,219 + Psest_3013 0.24 +0.3
3,201,345 + Psest_3013 0.34 +1.8
3,201,346 - Psest_3013 0.34 +1.7
3,201,442 - Psest_3013 0.42 +0.9

Or see this region's nucleotide sequence