Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2623

Experiment: Def Thallium(I) acetate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2620 and Psest_2621 overlap by 7 nucleotidesPsest_2621 and Psest_2622 overlap by 1 nucleotidesPsest_2622 and Psest_2623 are separated by 11 nucleotidesPsest_2623 and Psest_2624 are separated by 10 nucleotidesPsest_2624 and Psest_2625 are separated by 15 nucleotides Psest_2620: Psest_2620 - Flp pilus assembly protein, ATPase CpaE, at 2,803,028 to 2,804,257 _2620 Psest_2621: Psest_2621 - TadE-like protein., at 2,804,251 to 2,804,754 _2621 Psest_2622: Psest_2622 - TadE-like protein., at 2,804,754 to 2,805,224 _2622 Psest_2623: Psest_2623 - Flp pilus assembly protein TadG, at 2,805,236 to 2,806,570 _2623 Psest_2624: Psest_2624 - hypothetical protein, at 2,806,581 to 2,806,850 _2624 Psest_2625: Psest_2625 - Flp pilus assembly protein, secretin CpaC, at 2,806,866 to 2,808,380 _2625 Position (kb) 2805 2806 2807Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.429 kb on - strand, within Psest_2621at 2804.481 kb on - strand, within Psest_2621at 2804.481 kb on - strand, within Psest_2621at 2804.857 kb on + strand, within Psest_2622at 2804.858 kb on - strand, within Psest_2622at 2804.858 kb on - strand, within Psest_2622at 2804.968 kb on + strand, within Psest_2622at 2804.968 kb on + strand, within Psest_2622at 2804.968 kb on + strand, within Psest_2622at 2804.969 kb on - strand, within Psest_2622at 2805.250 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.282 kb on + strandat 2805.282 kb on + strandat 2805.282 kb on + strandat 2805.282 kb on + strandat 2805.282 kb on + strandat 2805.283 kb on - strandat 2805.283 kb on - strandat 2805.332 kb on + strandat 2805.497 kb on + strand, within Psest_2623at 2805.498 kb on - strand, within Psest_2623at 2805.498 kb on - strand, within Psest_2623at 2805.597 kb on + strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.599 kb on + strand, within Psest_2623at 2805.747 kb on + strand, within Psest_2623at 2805.747 kb on + strand, within Psest_2623at 2805.748 kb on - strand, within Psest_2623at 2805.748 kb on - strand, within Psest_2623at 2806.008 kb on + strand, within Psest_2623at 2806.008 kb on + strand, within Psest_2623at 2806.009 kb on - strand, within Psest_2623at 2806.009 kb on - strand, within Psest_2623at 2806.016 kb on - strand, within Psest_2623at 2806.121 kb on - strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.156 kb on - strand, within Psest_2623at 2806.156 kb on - strand, within Psest_2623at 2806.160 kb on - strand, within Psest_2623at 2806.160 kb on - strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.179 kb on + strand, within Psest_2623at 2806.179 kb on + strand, within Psest_2623at 2806.180 kb on - strand, within Psest_2623at 2806.180 kb on - strand, within Psest_2623at 2806.180 kb on - strand, within Psest_2623at 2806.370 kb on + strand, within Psest_2623at 2806.447 kb on + strandat 2806.447 kb on + strandat 2806.447 kb on + strandat 2806.448 kb on - strandat 2806.511 kb on + strandat 2806.511 kb on + strandat 2806.511 kb on + strandat 2806.512 kb on - strandat 2806.512 kb on - strandat 2806.512 kb on - strandat 2806.512 kb on - strandat 2806.512 kb on - strandat 2806.744 kb on + strand, within Psest_2624at 2806.744 kb on + strand, within Psest_2624at 2806.756 kb on + strand, within Psest_2624at 2806.796 kb on - strand, within Psest_2624at 2806.796 kb on - strand, within Psest_2624at 2806.867 kb on + strandat 2806.867 kb on + strandat 2806.867 kb on + strandat 2806.868 kb on - strandat 2806.960 kb on + strandat 2806.960 kb on + strandat 2806.960 kb on + strandat 2806.961 kb on - strandat 2806.961 kb on - strandat 2806.961 kb on - strandat 2806.961 kb on - strandat 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.081 kb on - strand, within Psest_2625at 2807.081 kb on - strand, within Psest_2625at 2807.081 kb on - strand, within Psest_2625at 2807.081 kb on - strand, within Psest_2625at 2807.147 kb on - strand, within Psest_2625at 2807.147 kb on - strand, within Psest_2625at 2807.147 kb on - strand, within Psest_2625at 2807.147 kb on - strand, within Psest_2625at 2807.402 kb on - strand, within Psest_2625at 2807.402 kb on - strand, within Psest_2625

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Thallium(I) acetate 0.125 mg/ml
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2,804,401 + Psest_2621 0.30 -2.1
2,804,401 + Psest_2621 0.30 +1.2
2,804,401 + Psest_2621 0.30 +0.6
2,804,401 + Psest_2621 0.30 +1.6
2,804,401 + Psest_2621 0.30 +1.3
2,804,402 - Psest_2621 0.30 +0.2
2,804,402 - Psest_2621 0.30 +1.0
2,804,402 - Psest_2621 0.30 -0.1
2,804,402 - Psest_2621 0.30 -1.4
2,804,429 - Psest_2621 0.35 +1.6
2,804,481 - Psest_2621 0.46 -0.4
2,804,481 - Psest_2621 0.46 +0.8
2,804,857 + Psest_2622 0.22 -0.0
2,804,858 - Psest_2622 0.22 -0.5
2,804,858 - Psest_2622 0.22 +0.6
2,804,968 + Psest_2622 0.45 +0.6
2,804,968 + Psest_2622 0.45 -2.1
2,804,968 + Psest_2622 0.45 +0.9
2,804,969 - Psest_2622 0.46 +0.3
2,805,250 + +0.3
2,805,273 + +1.2
2,805,273 + -0.8
2,805,273 + +0.2
2,805,273 + -0.1
2,805,273 + +2.2
2,805,273 + -0.8
2,805,273 + -0.4
2,805,273 + -0.8
2,805,273 + +0.6
2,805,273 + +0.8
2,805,274 - +0.2
2,805,274 - -0.1
2,805,274 - +1.5
2,805,274 - +2.2
2,805,274 - +0.5
2,805,274 - -0.8
2,805,274 - +0.2
2,805,274 - -0.4
2,805,274 - +0.2
2,805,274 - +0.5
2,805,274 - -0.3
2,805,274 - -0.8
2,805,274 - +0.0
2,805,274 - +0.5
2,805,274 - +0.2
2,805,282 + -0.0
2,805,282 + -0.8
2,805,282 + +1.4
2,805,282 + +0.0
2,805,282 + -0.6
2,805,283 - +0.2
2,805,283 - +0.2
2,805,332 + +0.1
2,805,497 + Psest_2623 0.20 +0.7
2,805,498 - Psest_2623 0.20 -1.0
2,805,498 - Psest_2623 0.20 +0.4
2,805,597 + Psest_2623 0.27 +0.3
2,805,598 - Psest_2623 0.27 -1.1
2,805,598 - Psest_2623 0.27 +1.2
2,805,598 - Psest_2623 0.27 +0.9
2,805,598 - Psest_2623 0.27 +0.7
2,805,599 + Psest_2623 0.27 -0.8
2,805,747 + Psest_2623 0.38 -1.9
2,805,747 + Psest_2623 0.38 -0.5
2,805,748 - Psest_2623 0.38 -0.3
2,805,748 - Psest_2623 0.38 +2.2
2,806,008 + Psest_2623 0.58 +0.5
2,806,008 + Psest_2623 0.58 +1.6
2,806,009 - Psest_2623 0.58 +1.2
2,806,009 - Psest_2623 0.58 +0.6
2,806,016 - Psest_2623 0.58 +1.0
2,806,121 - Psest_2623 0.66 +1.8
2,806,155 + Psest_2623 0.69 +0.7
2,806,155 + Psest_2623 0.69 -0.5
2,806,155 + Psest_2623 0.69 +0.3
2,806,155 + Psest_2623 0.69 +0.1
2,806,155 + Psest_2623 0.69 +1.5
2,806,156 - Psest_2623 0.69 +0.2
2,806,156 - Psest_2623 0.69 -1.5
2,806,160 - Psest_2623 0.69 -1.1
2,806,160 - Psest_2623 0.69 +0.9
2,806,175 + Psest_2623 0.70 +0.3
2,806,175 + Psest_2623 0.70 +0.5
2,806,175 + Psest_2623 0.70 -0.1
2,806,175 + Psest_2623 0.70 +0.9
2,806,175 + Psest_2623 0.70 +0.0
2,806,175 + Psest_2623 0.70 +1.2
2,806,175 + Psest_2623 0.70 -0.2
2,806,175 + Psest_2623 0.70 -0.5
2,806,176 - Psest_2623 0.70 -1.8
2,806,176 - Psest_2623 0.70 +0.9
2,806,176 - Psest_2623 0.70 +0.8
2,806,176 - Psest_2623 0.70 +3.0
2,806,176 - Psest_2623 0.70 -0.4
2,806,176 - Psest_2623 0.70 +0.9
2,806,176 - Psest_2623 0.70 -1.0
2,806,176 - Psest_2623 0.70 -0.7
2,806,179 + Psest_2623 0.71 -0.5
2,806,179 + Psest_2623 0.71 +0.2
2,806,180 - Psest_2623 0.71 -0.8
2,806,180 - Psest_2623 0.71 +1.4
2,806,180 - Psest_2623 0.71 -0.7
2,806,370 + Psest_2623 0.85 +0.7
2,806,447 + +0.6
2,806,447 + -0.4
2,806,447 + +1.2
2,806,448 - +0.8
2,806,511 + +0.7
2,806,511 + +0.9
2,806,511 + +0.6
2,806,512 - -0.1
2,806,512 - +0.8
2,806,512 - +0.7
2,806,512 - -1.3
2,806,512 - +0.1
2,806,744 + Psest_2624 0.60 +1.0
2,806,744 + Psest_2624 0.60 +0.7
2,806,756 + Psest_2624 0.65 -1.1
2,806,796 - Psest_2624 0.80 +0.3
2,806,796 - Psest_2624 0.80 +2.1
2,806,867 + +1.2
2,806,867 + +0.6
2,806,867 + -2.4
2,806,868 - +1.9
2,806,960 + +1.0
2,806,960 + +0.3
2,806,960 + -0.2
2,806,961 - -0.6
2,806,961 - -0.2
2,806,961 - -1.3
2,806,961 - +1.2
2,807,080 + Psest_2625 0.14 -1.8
2,807,080 + Psest_2625 0.14 +0.0
2,807,080 + Psest_2625 0.14 +0.4
2,807,080 + Psest_2625 0.14 -0.3
2,807,080 + Psest_2625 0.14 +1.4
2,807,080 + Psest_2625 0.14 -0.1
2,807,080 + Psest_2625 0.14 +0.6
2,807,080 + Psest_2625 0.14 +1.1
2,807,080 + Psest_2625 0.14 -0.0
2,807,080 + Psest_2625 0.14 +0.1
2,807,080 + Psest_2625 0.14 +0.7
2,807,081 - Psest_2625 0.14 +0.7
2,807,081 - Psest_2625 0.14 +0.2
2,807,081 - Psest_2625 0.14 +0.6
2,807,081 - Psest_2625 0.14 +0.7
2,807,147 - Psest_2625 0.19 +1.2
2,807,147 - Psest_2625 0.19 +0.4
2,807,147 - Psest_2625 0.19 +1.2
2,807,147 - Psest_2625 0.19 -0.4
2,807,402 - Psest_2625 0.35 -0.2
2,807,402 - Psest_2625 0.35 +0.4

Or see this region's nucleotide sequence