Experiment: Def Thallium(I) acetate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2348 and Psest_2349 are separated by 11 nucleotides Psest_2349 and Psest_2351 are separated by 158 nucleotides Psest_2351 and Psest_2352 are separated by 98 nucleotides
Psest_2348: Psest_2348 - urea carboxylase-associated protein 2, at 2,501,847 to 2,502,575
_2348
Psest_2349: Psest_2349 - urea carboxylase-associated protein 1, at 2,502,587 to 2,503,222
_2349
Psest_2351: Psest_2351 - urea carboxylase, at 2,503,381 to 2,506,980
_2351
Psest_2352: Psest_2352 - allophanate hydrolase, at 2,507,079 to 2,508,881
_2352
Position (kb)
2503
2504
2505
2506
2507 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2502.384 kb on + strand, within Psest_2348 at 2502.450 kb on + strand, within Psest_2348 at 2502.568 kb on - strand at 2502.568 kb on - strand at 2502.568 kb on - strand at 2502.803 kb on + strand, within Psest_2349 at 2502.803 kb on + strand, within Psest_2349 at 2502.828 kb on - strand, within Psest_2349 at 2502.948 kb on - strand, within Psest_2349 at 2502.948 kb on - strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.107 kb on - strand, within Psest_2349 at 2503.164 kb on + strand at 2503.165 kb on - strand at 2503.340 kb on - strand at 2503.558 kb on + strand at 2503.981 kb on + strand, within Psest_2351 at 2503.981 kb on + strand, within Psest_2351 at 2503.981 kb on + strand, within Psest_2351 at 2503.981 kb on + strand, within Psest_2351 at 2503.982 kb on - strand, within Psest_2351 at 2503.982 kb on - strand, within Psest_2351 at 2504.010 kb on - strand, within Psest_2351 at 2504.010 kb on - strand, within Psest_2351 at 2504.010 kb on - strand, within Psest_2351 at 2504.015 kb on + strand, within Psest_2351 at 2504.015 kb on + strand, within Psest_2351 at 2504.015 kb on + strand, within Psest_2351 at 2504.015 kb on + strand, within Psest_2351 at 2504.015 kb on + strand, within Psest_2351 at 2504.016 kb on - strand, within Psest_2351 at 2504.016 kb on - strand, within Psest_2351 at 2504.016 kb on - strand, within Psest_2351 at 2504.210 kb on - strand, within Psest_2351 at 2504.233 kb on + strand, within Psest_2351 at 2504.233 kb on + strand, within Psest_2351 at 2504.233 kb on + strand, within Psest_2351 at 2504.404 kb on + strand, within Psest_2351 at 2504.404 kb on + strand, within Psest_2351 at 2504.405 kb on - strand, within Psest_2351 at 2504.494 kb on - strand, within Psest_2351 at 2504.630 kb on - strand, within Psest_2351 at 2504.653 kb on + strand, within Psest_2351 at 2504.728 kb on + strand, within Psest_2351 at 2504.729 kb on - strand, within Psest_2351 at 2504.729 kb on - strand, within Psest_2351 at 2504.729 kb on - strand, within Psest_2351 at 2504.729 kb on - strand, within Psest_2351 at 2505.079 kb on + strand, within Psest_2351 at 2505.079 kb on + strand, within Psest_2351 at 2505.080 kb on - strand, within Psest_2351 at 2505.080 kb on - strand, within Psest_2351 at 2505.080 kb on - strand, within Psest_2351 at 2505.115 kb on + strand, within Psest_2351 at 2505.115 kb on + strand, within Psest_2351 at 2505.116 kb on - strand, within Psest_2351 at 2505.289 kb on + strand, within Psest_2351 at 2505.313 kb on + strand, within Psest_2351 at 2505.314 kb on - strand, within Psest_2351 at 2505.328 kb on + strand, within Psest_2351 at 2505.328 kb on + strand, within Psest_2351 at 2505.328 kb on + strand, within Psest_2351 at 2505.329 kb on - strand, within Psest_2351 at 2505.331 kb on - strand, within Psest_2351 at 2505.475 kb on + strand, within Psest_2351 at 2505.729 kb on - strand, within Psest_2351 at 2505.909 kb on + strand, within Psest_2351 at 2505.909 kb on + strand, within Psest_2351 at 2505.910 kb on - strand, within Psest_2351 at 2505.910 kb on - strand, within Psest_2351 at 2505.941 kb on - strand, within Psest_2351 at 2506.049 kb on + strand, within Psest_2351 at 2506.050 kb on - strand, within Psest_2351 at 2506.050 kb on - strand, within Psest_2351 at 2506.096 kb on + strand, within Psest_2351 at 2506.096 kb on + strand, within Psest_2351 at 2506.096 kb on + strand, within Psest_2351 at 2506.096 kb on + strand, within Psest_2351 at 2506.096 kb on + strand, within Psest_2351 at 2506.096 kb on + strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.097 kb on - strand, within Psest_2351 at 2506.189 kb on + strand, within Psest_2351 at 2506.214 kb on - strand, within Psest_2351 at 2506.214 kb on - strand, within Psest_2351 at 2506.214 kb on - strand, within Psest_2351 at 2506.214 kb on - strand, within Psest_2351 at 2506.214 kb on - strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.238 kb on + strand, within Psest_2351 at 2506.239 kb on - strand, within Psest_2351 at 2506.239 kb on - strand, within Psest_2351 at 2506.239 kb on - strand, within Psest_2351 at 2506.239 kb on - strand, within Psest_2351 at 2506.239 kb on - strand, within Psest_2351 at 2506.239 kb on - strand, within Psest_2351 at 2506.239 kb on - strand, within Psest_2351 at 2506.239 kb on - strand, within Psest_2351 at 2506.240 kb on + strand, within Psest_2351 at 2506.241 kb on - strand, within Psest_2351 at 2506.300 kb on + strand, within Psest_2351 at 2506.300 kb on + strand, within Psest_2351 at 2506.301 kb on - strand, within Psest_2351 at 2506.301 kb on - strand, within Psest_2351 at 2506.301 kb on - strand, within Psest_2351 at 2506.301 kb on - strand, within Psest_2351 at 2506.301 kb on - strand, within Psest_2351 at 2506.301 kb on - strand, within Psest_2351 at 2506.354 kb on + strand, within Psest_2351 at 2506.354 kb on + strand, within Psest_2351 at 2506.354 kb on + strand, within Psest_2351 at 2506.354 kb on + strand, within Psest_2351 at 2506.354 kb on + strand, within Psest_2351 at 2506.354 kb on + strand, within Psest_2351 at 2506.354 kb on + strand, within Psest_2351 at 2506.355 kb on - strand, within Psest_2351 at 2506.355 kb on - strand, within Psest_2351 at 2506.355 kb on - strand, within Psest_2351 at 2506.355 kb on - strand, within Psest_2351 at 2506.355 kb on - strand, within Psest_2351 at 2506.355 kb on - strand, within Psest_2351 at 2506.355 kb on - strand, within Psest_2351 at 2506.367 kb on - strand, within Psest_2351 at 2506.495 kb on + strand, within Psest_2351 at 2507.065 kb on - strand at 2507.168 kb on - strand at 2507.168 kb on - strand at 2507.318 kb on + strand, within Psest_2352 at 2507.367 kb on + strand, within Psest_2352 at 2507.367 kb on + strand, within Psest_2352 at 2507.368 kb on - strand, within Psest_2352 at 2507.369 kb on + strand, within Psest_2352 at 2507.370 kb on - strand, within Psest_2352 at 2507.370 kb on - strand, within Psest_2352 at 2507.370 kb on - strand, within Psest_2352 at 2507.787 kb on + strand, within Psest_2352 at 2507.788 kb on - strand, within Psest_2352 at 2507.788 kb on - strand, within Psest_2352
Per-strain Table
Position Strand Gene LocusTag Fraction Def Thallium(I) acetate 0.125 mg/ml remove 2,502,384 + Psest_2348 0.74 -0.0 2,502,450 + Psest_2348 0.83 +0.8 2,502,568 - +0.5 2,502,568 - -1.4 2,502,568 - +0.6 2,502,803 + Psest_2349 0.34 -1.2 2,502,803 + Psest_2349 0.34 +2.7 2,502,828 - Psest_2349 0.38 -0.8 2,502,948 - Psest_2349 0.57 +1.2 2,502,948 - Psest_2349 0.57 +0.8 2,503,106 + Psest_2349 0.82 +0.8 2,503,106 + Psest_2349 0.82 -0.7 2,503,106 + Psest_2349 0.82 -0.4 2,503,106 + Psest_2349 0.82 +0.1 2,503,106 + Psest_2349 0.82 +1.1 2,503,106 + Psest_2349 0.82 +0.3 2,503,106 + Psest_2349 0.82 +1.4 2,503,107 - Psest_2349 0.82 +0.2 2,503,164 + -1.4 2,503,165 - -1.2 2,503,340 - -0.5 2,503,558 + +2.1 2,503,981 + Psest_2351 0.17 +0.1 2,503,981 + Psest_2351 0.17 +1.1 2,503,981 + Psest_2351 0.17 -1.5 2,503,981 + Psest_2351 0.17 -1.1 2,503,982 - Psest_2351 0.17 -0.3 2,503,982 - Psest_2351 0.17 +0.9 2,504,010 - Psest_2351 0.17 +0.1 2,504,010 - Psest_2351 0.17 +0.0 2,504,010 - Psest_2351 0.17 -0.9 2,504,015 + Psest_2351 0.18 +0.3 2,504,015 + Psest_2351 0.18 -1.1 2,504,015 + Psest_2351 0.18 -0.8 2,504,015 + Psest_2351 0.18 +1.1 2,504,015 + Psest_2351 0.18 -0.5 2,504,016 - Psest_2351 0.18 +0.1 2,504,016 - Psest_2351 0.18 -0.7 2,504,016 - Psest_2351 0.18 +0.1 2,504,210 - Psest_2351 0.23 -0.1 2,504,233 + Psest_2351 0.24 +0.6 2,504,233 + Psest_2351 0.24 -1.9 2,504,233 + Psest_2351 0.24 +0.3 2,504,404 + Psest_2351 0.28 -0.5 2,504,404 + Psest_2351 0.28 +0.4 2,504,405 - Psest_2351 0.28 +0.6 2,504,494 - Psest_2351 0.31 +1.6 2,504,630 - Psest_2351 0.35 +0.7 2,504,653 + Psest_2351 0.35 +0.6 2,504,728 + Psest_2351 0.37 -0.5 2,504,729 - Psest_2351 0.37 +1.8 2,504,729 - Psest_2351 0.37 +0.7 2,504,729 - Psest_2351 0.37 +0.9 2,504,729 - Psest_2351 0.37 +0.4 2,505,079 + Psest_2351 0.47 +0.1 2,505,079 + Psest_2351 0.47 +1.1 2,505,080 - Psest_2351 0.47 +0.6 2,505,080 - Psest_2351 0.47 +0.6 2,505,080 - Psest_2351 0.47 +0.6 2,505,115 + Psest_2351 0.48 +1.1 2,505,115 + Psest_2351 0.48 +1.1 2,505,116 - Psest_2351 0.48 -0.2 2,505,289 + Psest_2351 0.53 +2.9 2,505,313 + Psest_2351 0.54 -1.5 2,505,314 - Psest_2351 0.54 +1.1 2,505,328 + Psest_2351 0.54 +0.9 2,505,328 + Psest_2351 0.54 -0.2 2,505,328 + Psest_2351 0.54 -1.3 2,505,329 - Psest_2351 0.54 -0.3 2,505,331 - Psest_2351 0.54 +1.1 2,505,475 + Psest_2351 0.58 -1.5 2,505,729 - Psest_2351 0.65 +0.1 2,505,909 + Psest_2351 0.70 -0.1 2,505,909 + Psest_2351 0.70 +0.3 2,505,910 - Psest_2351 0.70 +1.1 2,505,910 - Psest_2351 0.70 +0.1 2,505,941 - Psest_2351 0.71 -1.5 2,506,049 + Psest_2351 0.74 +0.5 2,506,050 - Psest_2351 0.74 -0.5 2,506,050 - Psest_2351 0.74 -0.3 2,506,096 + Psest_2351 0.75 +0.3 2,506,096 + Psest_2351 0.75 +0.1 2,506,096 + Psest_2351 0.75 +0.8 2,506,096 + Psest_2351 0.75 -0.8 2,506,096 + Psest_2351 0.75 +0.7 2,506,096 + Psest_2351 0.75 -0.3 2,506,097 - Psest_2351 0.75 +0.5 2,506,097 - Psest_2351 0.75 +0.6 2,506,097 - Psest_2351 0.75 +1.1 2,506,097 - Psest_2351 0.75 +1.6 2,506,097 - Psest_2351 0.75 +2.4 2,506,097 - Psest_2351 0.75 +1.1 2,506,097 - Psest_2351 0.75 +1.1 2,506,097 - Psest_2351 0.75 +1.3 2,506,097 - Psest_2351 0.75 +2.4 2,506,097 - Psest_2351 0.75 -1.2 2,506,097 - Psest_2351 0.75 -2.1 2,506,097 - Psest_2351 0.75 -1.7 2,506,189 + Psest_2351 0.78 +1.1 2,506,214 - Psest_2351 0.79 +0.7 2,506,214 - Psest_2351 0.79 +0.1 2,506,214 - Psest_2351 0.79 +1.1 2,506,214 - Psest_2351 0.79 +0.5 2,506,214 - Psest_2351 0.79 +0.8 2,506,238 + Psest_2351 0.79 -0.9 2,506,238 + Psest_2351 0.79 -1.2 2,506,238 + Psest_2351 0.79 +0.5 2,506,238 + Psest_2351 0.79 -0.2 2,506,238 + Psest_2351 0.79 +1.1 2,506,238 + Psest_2351 0.79 +0.8 2,506,238 + +1.1 2,506,238 + Psest_2351 0.79 -1.7 2,506,238 + Psest_2351 0.79 -1.5 2,506,238 + Psest_2351 0.79 +0.2 2,506,238 + Psest_2351 0.79 +3.1 2,506,238 + Psest_2351 0.79 +2.1 2,506,238 + Psest_2351 0.79 +1.8 2,506,238 + Psest_2351 0.79 +1.1 2,506,238 + Psest_2351 0.79 +1.6 2,506,238 + Psest_2351 0.79 +0.5 2,506,238 + Psest_2351 0.79 +0.7 2,506,238 + Psest_2351 0.79 -1.2 2,506,238 + Psest_2351 0.79 -2.0 2,506,239 - Psest_2351 0.79 -1.7 2,506,239 - Psest_2351 0.79 +0.5 2,506,239 - Psest_2351 0.79 -0.3 2,506,239 - Psest_2351 0.79 -0.5 2,506,239 - Psest_2351 0.79 -0.4 2,506,239 - Psest_2351 0.79 +0.3 2,506,239 - Psest_2351 0.79 +0.1 2,506,239 - Psest_2351 0.79 +0.6 2,506,240 + Psest_2351 0.79 +1.9 2,506,241 - Psest_2351 0.79 +1.0 2,506,300 + Psest_2351 0.81 -0.2 2,506,300 + Psest_2351 0.81 +0.7 2,506,301 - Psest_2351 0.81 +1.4 2,506,301 - Psest_2351 0.81 -1.4 2,506,301 - Psest_2351 0.81 +0.2 2,506,301 - Psest_2351 0.81 +0.5 2,506,301 - Psest_2351 0.81 +1.1 2,506,301 - Psest_2351 0.81 +1.4 2,506,354 + Psest_2351 0.83 -0.5 2,506,354 + Psest_2351 0.83 +1.0 2,506,354 + Psest_2351 0.83 +0.7 2,506,354 + Psest_2351 0.83 +1.1 2,506,354 + Psest_2351 0.83 +3.1 2,506,354 + Psest_2351 0.83 +0.6 2,506,354 + Psest_2351 0.83 -0.5 2,506,355 - Psest_2351 0.83 +1.7 2,506,355 - Psest_2351 0.83 +0.7 2,506,355 - Psest_2351 0.83 +1.1 2,506,355 - Psest_2351 0.83 -0.5 2,506,355 - Psest_2351 0.83 -1.0 2,506,355 - Psest_2351 0.83 +0.1 2,506,355 - Psest_2351 0.83 +1.0 2,506,367 - Psest_2351 0.83 -1.2 2,506,495 + Psest_2351 0.86 +0.3 2,507,065 - +0.7 2,507,168 - -1.2 2,507,168 - +1.1 2,507,318 + Psest_2352 0.13 +0.1 2,507,367 + Psest_2352 0.16 +0.5 2,507,367 + Psest_2352 0.16 -0.5 2,507,368 - Psest_2352 0.16 -1.9 2,507,369 + Psest_2352 0.16 -0.8 2,507,370 - Psest_2352 0.16 +1.3 2,507,370 - Psest_2352 0.16 +0.5 2,507,370 - Psest_2352 0.16 +2.4 2,507,787 + Psest_2352 0.39 +0.4 2,507,788 - Psest_2352 0.39 -0.9 2,507,788 - Psest_2352 0.39 +0.1
Or see this region's nucleotide sequence