Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1982

Experiment: Def Thallium(I) acetate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1981 and Psest_1982 are separated by 134 nucleotidesPsest_1982 and Psest_1983 are separated by 102 nucleotides Psest_1981: Psest_1981 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,095,072 to 2,096,148 _1981 Psest_1982: Psest_1982 - DNA gyrase, A subunit, at 2,096,283 to 2,099,093 _1982 Psest_1983: Psest_1983 - phosphoserine aminotransferase, at 2,099,196 to 2,100,281 _1983 Position (kb) 2096 2097 2098 2099 2100Strain fitness (log2 ratio) -1 0 1at 2095.657 kb on + strand, within Psest_1981at 2095.657 kb on + strand, within Psest_1981at 2095.657 kb on + strand, within Psest_1981at 2095.657 kb on + strand, within Psest_1981at 2095.657 kb on + strand, within Psest_1981at 2095.657 kb on + strand, within Psest_1981at 2095.657 kb on + strand, within Psest_1981at 2095.657 kb on + strand, within Psest_1981at 2095.658 kb on - strand, within Psest_1981at 2095.658 kb on - strand, within Psest_1981at 2095.658 kb on - strand, within Psest_1981at 2095.658 kb on - strand, within Psest_1981at 2095.852 kb on + strand, within Psest_1981at 2095.852 kb on + strand, within Psest_1981at 2096.212 kb on + strandat 2096.214 kb on + strandat 2096.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Thallium(I) acetate 0.125 mg/ml
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2,095,657 + Psest_1981 0.54 +0.4
2,095,657 + Psest_1981 0.54 -1.1
2,095,657 + Psest_1981 0.54 -0.3
2,095,657 + Psest_1981 0.54 -0.6
2,095,657 + Psest_1981 0.54 -1.4
2,095,657 + Psest_1981 0.54 -0.4
2,095,657 + Psest_1981 0.54 -0.9
2,095,657 + Psest_1981 0.54 +0.8
2,095,658 - Psest_1981 0.54 -0.4
2,095,658 - Psest_1981 0.54 +0.2
2,095,658 - Psest_1981 0.54 +0.7
2,095,658 - Psest_1981 0.54 +1.2
2,095,852 + Psest_1981 0.72 +0.6
2,095,852 + Psest_1981 0.72 -1.1
2,096,212 + -0.6
2,096,214 + +0.4
2,096,264 + +0.6

Or see this region's nucleotide sequence