Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt amt and glnB-1 are separated by 34 nucleotides glnB-1 and SO0762 are separated by 308 nucleotides
SO0760: amt - ammonium transporter (NCBI ptt file), at 775,008 to 776,234
amt
SO0761: glnB-1 - nitrogen regulatory protein P-II 1 (NCBI ptt file), at 776,269 to 776,607
glnB-1
SO0762: SO0762 - isochorismatase family protein (NCBI ptt file), at 776,916 to 777,458
SO0762
Position (kb) 776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 775.310 kb on + strand, within amt at 775.322 kb on + strand, within amt at 775.330 kb on - strand, within amt at 775.501 kb on + strand, within amt at 775.512 kb on + strand, within amt at 775.659 kb on + strand, within amt at 775.671 kb on + strand, within amt at 775.744 kb on - strand, within amt at 775.794 kb on - strand, within amt at 775.807 kb on + strand, within amt at 775.875 kb on + strand, within amt at 776.019 kb on - strand, within amt at 776.124 kb on + strand at 776.124 kb on + strand at 776.124 kb on + strand at 776.158 kb on + strand at 776.214 kb on + strand at 776.275 kb on - strand at 776.282 kb on + strand at 776.290 kb on - strand at 776.316 kb on + strand, within glnB-1 at 776.380 kb on - strand, within glnB-1 at 776.462 kb on + strand, within glnB-1 at 776.483 kb on - strand, within glnB-1 at 776.504 kb on + strand, within glnB-1 at 776.527 kb on + strand, within glnB-1 at 776.599 kb on - strand at 776.614 kb on - strand at 776.788 kb on - strand at 776.915 kb on - strand at 776.940 kb on - strand at 776.984 kb on - strand, within SO0762 at 777.028 kb on - strand, within SO0762 at 777.030 kb on + strand, within SO0762 at 777.053 kb on + strand, within SO0762 at 777.063 kb on + strand, within SO0762 at 777.156 kb on + strand, within SO0762 at 777.174 kb on - strand, within SO0762 at 777.319 kb on + strand, within SO0762 at 777.369 kb on + strand, within SO0762 at 777.384 kb on - strand, within SO0762 at 777.408 kb on + strand at 777.468 kb on + strand at 777.497 kb on + strand at 777.497 kb on + strand at 777.497 kb on + strand at 777.497 kb on + strand at 777.505 kb on - strand at 777.505 kb on - strand at 777.505 kb on - strand at 777.505 kb on - strand at 777.517 kb on - strand at 777.533 kb on - strand at 777.540 kb on + strand at 777.556 kb on + strand at 777.556 kb on + strand at 777.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 775,310 + amt SO0760 0.25 -1.0 775,322 + amt SO0760 0.26 -3.1 775,330 - amt SO0760 0.26 -2.4 775,501 + amt SO0760 0.40 -2.0 775,512 + amt SO0760 0.41 -2.2 775,659 + amt SO0760 0.53 -1.5 775,671 + amt SO0760 0.54 -1.2 775,744 - amt SO0760 0.60 -1.6 775,794 - amt SO0760 0.64 -3.4 775,807 + amt SO0760 0.65 -0.9 775,875 + amt SO0760 0.71 -1.2 776,019 - amt SO0760 0.82 -2.9 776,124 + -2.2 776,124 + +0.7 776,124 + -0.3 776,158 + -1.8 776,214 + -2.6 776,275 - -2.3 776,282 + -2.2 776,290 - -0.5 776,316 + glnB-1 SO0761 0.14 -1.8 776,380 - glnB-1 SO0761 0.33 -0.9 776,462 + glnB-1 SO0761 0.57 -1.3 776,483 - glnB-1 SO0761 0.63 -1.3 776,504 + glnB-1 SO0761 0.69 -1.2 776,527 + glnB-1 SO0761 0.76 -2.2 776,599 - -1.4 776,614 - +0.2 776,788 - +0.2 776,915 - -0.2 776,940 - -0.1 776,984 - SO0762 0.13 -0.7 777,028 - SO0762 0.21 +0.3 777,030 + SO0762 0.21 -0.0 777,053 + SO0762 0.25 -1.1 777,063 + SO0762 0.27 -0.5 777,156 + SO0762 0.44 -0.0 777,174 - SO0762 0.48 +0.4 777,319 + SO0762 0.74 +1.2 777,369 + SO0762 0.83 +0.6 777,384 - SO0762 0.86 -0.5 777,408 + -0.1 777,468 + +1.0 777,497 + -0.3 777,497 + +0.1 777,497 + -0.5 777,497 + +0.6 777,505 - -1.0 777,505 - +0.2 777,505 - +0.3 777,505 - +0.6 777,517 - -0.6 777,533 - -0.5 777,540 + +0.4 777,556 + -0.1 777,556 + -0.6 777,556 + +0.1
Or see this region's nucleotide sequence