Strain Fitness in Shewanella oneidensis MR-1 around SO4653

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsbp and cysT-2 are separated by 5 nucleotidescysT-2 and cysW-2 are separated by 4 nucleotidescysW-2 and cysA-2 are separated by 27 nucleotides SO4652: sbp - sulfate ABC transporter, periplasmic sulfate-binding protein (NCBI ptt file), at 4,848,018 to 4,849,031 sbp SO4653: cysT-2 - sulfate ABC transporter, permease protein (NCBI ptt file), at 4,849,037 to 4,849,918 cysT-2 SO4654: cysW-2 - sulfate ABC transporter, permease protein (NCBI ptt file), at 4,849,923 to 4,850,774 cysW-2 SO4655: cysA-2 - sulfate ABC transporter, ATP-binding protein (NCBI ptt file), at 4,850,802 to 4,851,866 cysA-2 Position (kb) 4849 4850Strain fitness (log2 ratio) -2 -1 0 1at 4848.051 kb on - strandat 4848.051 kb on - strandat 4848.060 kb on + strandat 4848.060 kb on + strandat 4848.217 kb on - strand, within sbpat 4848.227 kb on - strand, within sbpat 4848.243 kb on + strand, within sbpat 4848.251 kb on - strand, within sbpat 4848.284 kb on + strand, within sbpat 4848.292 kb on - strand, within sbpat 4848.351 kb on + strand, within sbpat 4848.366 kb on + strand, within sbpat 4848.366 kb on + strand, within sbpat 4848.447 kb on + strand, within sbpat 4848.455 kb on + strand, within sbpat 4848.455 kb on - strand, within sbpat 4848.456 kb on - strand, within sbpat 4848.456 kb on - strand, within sbpat 4848.456 kb on - strand, within sbpat 4848.510 kb on + strand, within sbpat 4848.515 kb on + strand, within sbpat 4848.517 kb on + strand, within sbpat 4848.560 kb on - strand, within sbpat 4848.591 kb on + strand, within sbpat 4848.625 kb on + strand, within sbpat 4848.633 kb on - strand, within sbpat 4848.824 kb on + strand, within sbpat 4848.824 kb on + strand, within sbpat 4848.824 kb on + strand, within sbpat 4848.824 kb on + strand, within sbpat 4848.824 kb on + strand, within sbpat 4848.824 kb on + strand, within sbpat 4848.832 kb on - strand, within sbpat 4848.832 kb on - strand, within sbpat 4848.832 kb on - strand, within sbpat 4848.897 kb on + strand, within sbpat 4848.932 kb on - strandat 4848.964 kb on + strandat 4848.969 kb on + strandat 4849.049 kb on - strandat 4849.104 kb on - strandat 4849.135 kb on - strand, within cysT-2at 4849.139 kb on + strand, within cysT-2at 4849.147 kb on - strand, within cysT-2at 4849.147 kb on - strand, within cysT-2at 4849.147 kb on - strand, within cysT-2at 4849.147 kb on - strand, within cysT-2at 4849.147 kb on - strand, within cysT-2at 4849.189 kb on + strand, within cysT-2at 4849.194 kb on + strand, within cysT-2at 4849.202 kb on - strand, within cysT-2at 4849.258 kb on + strand, within cysT-2at 4849.267 kb on - strand, within cysT-2at 4849.308 kb on + strand, within cysT-2at 4849.428 kb on + strand, within cysT-2at 4849.446 kb on - strand, within cysT-2at 4849.544 kb on + strand, within cysT-2at 4849.620 kb on + strand, within cysT-2at 4849.628 kb on - strand, within cysT-2at 4849.628 kb on - strand, within cysT-2at 4849.699 kb on - strand, within cysT-2at 4849.715 kb on + strand, within cysT-2at 4849.716 kb on - strand, within cysT-2at 4849.852 kb on - strandat 4849.889 kb on + strandat 4849.894 kb on + strandat 4850.033 kb on - strand, within cysW-2at 4850.098 kb on + strand, within cysW-2at 4850.249 kb on - strand, within cysW-2at 4850.291 kb on + strand, within cysW-2at 4850.299 kb on - strand, within cysW-2at 4850.301 kb on + strand, within cysW-2at 4850.301 kb on + strand, within cysW-2at 4850.312 kb on + strand, within cysW-2at 4850.384 kb on + strand, within cysW-2at 4850.391 kb on + strand, within cysW-2at 4850.391 kb on + strand, within cysW-2at 4850.399 kb on - strand, within cysW-2at 4850.428 kb on + strand, within cysW-2at 4850.438 kb on + strand, within cysW-2at 4850.438 kb on + strand, within cysW-2at 4850.438 kb on + strand, within cysW-2at 4850.475 kb on - strand, within cysW-2at 4850.615 kb on + strand, within cysW-2at 4850.635 kb on + strand, within cysW-2at 4850.643 kb on - strand, within cysW-2at 4850.693 kb on + strandat 4850.701 kb on - strandat 4850.709 kb on - strandat 4850.711 kb on + strandat 4850.762 kb on - strandat 4850.795 kb on + strandat 4850.895 kb on + strandat 4850.908 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
4,848,051 - -1.2
4,848,051 - -0.7
4,848,060 + +0.6
4,848,060 + -0.7
4,848,217 - sbp SO4652 0.20 -0.3
4,848,227 - sbp SO4652 0.21 -1.9
4,848,243 + sbp SO4652 0.22 -0.5
4,848,251 - sbp SO4652 0.23 -0.1
4,848,284 + sbp SO4652 0.26 -0.9
4,848,292 - sbp SO4652 0.27 -0.6
4,848,351 + sbp SO4652 0.33 -0.3
4,848,366 + sbp SO4652 0.34 -1.0
4,848,366 + sbp SO4652 0.34 +0.3
4,848,447 + sbp SO4652 0.42 -1.2
4,848,455 + sbp SO4652 0.43 -0.2
4,848,455 - sbp SO4652 0.43 -1.4
4,848,456 - sbp SO4652 0.43 -0.5
4,848,456 - sbp SO4652 0.43 -0.2
4,848,456 - sbp SO4652 0.43 -0.6
4,848,510 + sbp SO4652 0.49 -0.7
4,848,515 + sbp SO4652 0.49 -0.5
4,848,517 + sbp SO4652 0.49 -1.4
4,848,560 - sbp SO4652 0.53 +0.2
4,848,591 + sbp SO4652 0.57 -1.0
4,848,625 + sbp SO4652 0.60 -1.3
4,848,633 - sbp SO4652 0.61 -1.0
4,848,824 + sbp SO4652 0.79 -0.3
4,848,824 + sbp SO4652 0.79 +1.1
4,848,824 + sbp SO4652 0.79 +0.3
4,848,824 + sbp SO4652 0.79 -0.7
4,848,824 + sbp SO4652 0.79 -0.8
4,848,824 + sbp SO4652 0.79 +0.0
4,848,832 - sbp SO4652 0.80 -1.2
4,848,832 - sbp SO4652 0.80 -0.6
4,848,832 - sbp SO4652 0.80 -0.6
4,848,897 + sbp SO4652 0.87 -1.6
4,848,932 - +0.1
4,848,964 + -0.8
4,848,969 + +0.2
4,849,049 - -1.1
4,849,104 - -0.9
4,849,135 - cysT-2 SO4653 0.11 -0.6
4,849,139 + cysT-2 SO4653 0.12 -1.2
4,849,147 - cysT-2 SO4653 0.12 -0.1
4,849,147 - cysT-2 SO4653 0.12 -1.8
4,849,147 - cysT-2 SO4653 0.12 -0.3
4,849,147 - cysT-2 SO4653 0.12 -0.6
4,849,147 - cysT-2 SO4653 0.12 -1.6
4,849,189 + cysT-2 SO4653 0.17 +0.0
4,849,194 + cysT-2 SO4653 0.18 -2.6
4,849,202 - cysT-2 SO4653 0.19 -0.9
4,849,258 + cysT-2 SO4653 0.25 -0.1
4,849,267 - cysT-2 SO4653 0.26 -1.3
4,849,308 + cysT-2 SO4653 0.31 -1.0
4,849,428 + cysT-2 SO4653 0.44 +0.1
4,849,446 - cysT-2 SO4653 0.46 -2.1
4,849,544 + cysT-2 SO4653 0.57 -1.5
4,849,620 + cysT-2 SO4653 0.66 -0.9
4,849,628 - cysT-2 SO4653 0.67 -1.8
4,849,628 - cysT-2 SO4653 0.67 -0.2
4,849,699 - cysT-2 SO4653 0.75 -1.1
4,849,715 + cysT-2 SO4653 0.77 -1.3
4,849,716 - cysT-2 SO4653 0.77 -0.9
4,849,852 - -1.0
4,849,889 + -0.4
4,849,894 + -0.9
4,850,033 - cysW-2 SO4654 0.13 -0.8
4,850,098 + cysW-2 SO4654 0.21 -1.6
4,850,249 - cysW-2 SO4654 0.38 -1.1
4,850,291 + cysW-2 SO4654 0.43 -0.8
4,850,299 - cysW-2 SO4654 0.44 -1.3
4,850,301 + cysW-2 SO4654 0.44 -0.6
4,850,301 + cysW-2 SO4654 0.44 -2.1
4,850,312 + cysW-2 SO4654 0.46 -1.0
4,850,384 + cysW-2 SO4654 0.54 +0.5
4,850,391 + cysW-2 SO4654 0.55 -1.4
4,850,391 + cysW-2 SO4654 0.55 -1.7
4,850,399 - cysW-2 SO4654 0.56 -1.1
4,850,428 + cysW-2 SO4654 0.59 -1.4
4,850,438 + cysW-2 SO4654 0.60 -0.7
4,850,438 + cysW-2 SO4654 0.60 -0.8
4,850,438 + cysW-2 SO4654 0.60 -0.7
4,850,475 - cysW-2 SO4654 0.65 -1.8
4,850,615 + cysW-2 SO4654 0.81 -1.2
4,850,635 + cysW-2 SO4654 0.84 -0.3
4,850,643 - cysW-2 SO4654 0.85 -2.0
4,850,693 + -0.7
4,850,701 - -0.3
4,850,709 - -1.2
4,850,711 + -0.6
4,850,762 - -1.2
4,850,795 + -1.2
4,850,895 + -1.5
4,850,908 + -1.8

Or see this region's nucleotide sequence