Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0094

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0092 and Psest_0093 overlap by 4 nucleotidesPsest_0093 and Psest_0094 overlap by 4 nucleotidesPsest_0094 and Psest_0095 overlap by 1 nucleotidesPsest_0095 and Psest_0096 overlap by 1 nucleotides Psest_0092: Psest_0092 - phosphonate C-P lyase system protein PhnK, at 92,803 to 93,615 _0092 Psest_0093: Psest_0093 - Uncharacterized enzyme of phosphonate metabolism, at 93,612 to 94,481 _0093 Psest_0094: Psest_0094 - Uncharacterized enzyme of phosphonate metabolism, at 94,478 to 95,587 _0094 Psest_0095: Psest_0095 - phosphonate C-P lyase system protein PhnH, at 95,587 to 96,195 _0095 Psest_0096: Psest_0096 - phosphonate C-P lyase system protein PhnG, at 96,195 to 96,641 _0096 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2 3at 93.715 kb on + strand, within Psest_0093at 93.715 kb on + strand, within Psest_0093at 93.715 kb on + strand, within Psest_0093at 93.809 kb on - strand, within Psest_0093at 93.809 kb on - strand, within Psest_0093at 93.923 kb on - strand, within Psest_0093at 93.952 kb on + strand, within Psest_0093at 93.953 kb on - strand, within Psest_0093at 94.096 kb on + strand, within Psest_0093at 94.096 kb on + strand, within Psest_0093at 94.096 kb on + strand, within Psest_0093at 94.444 kb on + strandat 94.444 kb on + strandat 94.584 kb on + strandat 94.584 kb on + strandat 94.584 kb on + strandat 94.584 kb on + strandat 94.585 kb on - strandat 94.585 kb on - strandat 94.585 kb on - strandat 94.585 kb on - strandat 95.217 kb on + strand, within Psest_0094at 95.217 kb on + strand, within Psest_0094at 95.218 kb on - strand, within Psest_0094at 95.218 kb on - strand, within Psest_0094at 95.218 kb on - strand, within Psest_0094at 95.583 kb on + strandat 95.583 kb on + strandat 95.583 kb on + strandat 95.583 kb on + strandat 95.583 kb on + strandat 95.583 kb on + strandat 95.583 kb on + strandat 95.583 kb on + strandat 95.583 kb on + strandat 95.583 kb on + strandat 95.584 kb on - strandat 95.584 kb on - strandat 95.584 kb on - strandat 95.584 kb on - strandat 95.584 kb on - strandat 95.584 kb on - strandat 95.584 kb on - strandat 95.584 kb on - strandat 95.584 kb on - strandat 95.855 kb on + strand, within Psest_0095at 95.855 kb on + strand, within Psest_0095at 95.855 kb on + strand, within Psest_0095at 95.855 kb on + strand, within Psest_0095at 95.856 kb on - strand, within Psest_0095at 95.856 kb on - strandat 96.036 kb on - strand, within Psest_0095at 96.394 kb on + strand, within Psest_0096at 96.535 kb on + strand, within Psest_0096

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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93,715 + Psest_0093 0.12 +0.4
93,715 + Psest_0093 0.12 -0.1
93,715 + Psest_0093 0.12 +2.2
93,809 - Psest_0093 0.23 +1.4
93,809 - Psest_0093 0.23 +1.2
93,923 - Psest_0093 0.36 +2.2
93,952 + Psest_0093 0.39 -0.8
93,953 - Psest_0093 0.39 -1.6
94,096 + Psest_0093 0.56 +1.2
94,096 + Psest_0093 0.56 -0.4
94,096 + Psest_0093 0.56 +1.2
94,444 + +0.7
94,444 + +0.2
94,584 + +1.2
94,584 + +0.6
94,584 + +1.4
94,584 + +1.8
94,585 - -0.1
94,585 - -1.8
94,585 - -0.8
94,585 - +0.8
95,217 + Psest_0094 0.67 +0.8
95,217 + Psest_0094 0.67 +0.8
95,218 - Psest_0094 0.67 +0.6
95,218 - Psest_0094 0.67 +1.2
95,218 - Psest_0094 0.67 -0.6
95,583 + +1.2
95,583 + -0.4
95,583 + +2.8
95,583 + +0.9
95,583 + +2.2
95,583 + -0.4
95,583 + -0.8
95,583 + +1.2
95,583 + +1.2
95,583 + +0.2
95,584 - +1.2
95,584 - +1.2
95,584 - +1.2
95,584 - +0.5
95,584 - +1.1
95,584 - +0.2
95,584 - +0.1
95,584 - -0.4
95,584 - +1.2
95,855 + Psest_0095 0.44 +1.2
95,855 + Psest_0095 0.44 +0.2
95,855 + Psest_0095 0.44 +0.6
95,855 + Psest_0095 0.44 +1.2
95,856 - Psest_0095 0.44 +1.5
95,856 - +0.2
96,036 - Psest_0095 0.74 -0.4
96,394 + Psest_0096 0.45 -0.8
96,535 + Psest_0096 0.76 +2.2

Or see this region's nucleotide sequence