Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4145

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4144 and Psest_4145 overlap by 4 nucleotidesPsest_4145 and Psest_4146 are separated by 8 nucleotides Psest_4144: Psest_4144 - flagellar hook-associated protein FlgK, at 4,327,340 to 4,328,719 _4144 Psest_4145: Psest_4145 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 4,328,716 to 4,329,828 _4145 Psest_4146: Psest_4146 - Flagellar basal-body P-ring protein, at 4,329,837 to 4,330,949 _4146 Position (kb) 4328 4329 4330Strain fitness (log2 ratio) -2 -1 0 1 2at 4327.755 kb on + strand, within Psest_4144at 4327.755 kb on + strand, within Psest_4144at 4327.756 kb on - strand, within Psest_4144at 4327.756 kb on - strand, within Psest_4144at 4327.881 kb on + strand, within Psest_4144at 4327.894 kb on - strand, within Psest_4144at 4328.057 kb on + strand, within Psest_4144at 4328.063 kb on - strand, within Psest_4144at 4328.472 kb on + strand, within Psest_4144at 4328.473 kb on - strand, within Psest_4144at 4328.475 kb on + strand, within Psest_4144at 4328.475 kb on + strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.476 kb on - strand, within Psest_4144at 4328.693 kb on - strandat 4328.695 kb on - strandat 4328.829 kb on + strand, within Psest_4145at 4328.829 kb on + strand, within Psest_4145at 4329.144 kb on - strand, within Psest_4145at 4329.200 kb on + strand, within Psest_4145at 4329.224 kb on + strand, within Psest_4145at 4329.224 kb on + strand, within Psest_4145at 4329.225 kb on - strand, within Psest_4145at 4329.225 kb on - strand, within Psest_4145at 4329.614 kb on + strand, within Psest_4145at 4329.614 kb on + strand, within Psest_4145at 4329.615 kb on - strand, within Psest_4145at 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.839 kb on - strandat 4330.312 kb on + strand, within Psest_4146at 4330.312 kb on + strand, within Psest_4146at 4330.313 kb on - strand, within Psest_4146at 4330.313 kb on - strand, within Psest_4146at 4330.313 kb on - strand, within Psest_4146at 4330.534 kb on + strand, within Psest_4146at 4330.534 kb on + strand, within Psest_4146at 4330.535 kb on - strand, within Psest_4146at 4330.535 kb on - strand, within Psest_4146at 4330.645 kb on + strand, within Psest_4146at 4330.646 kb on - strand, within Psest_4146at 4330.646 kb on - strand, within Psest_4146at 4330.646 kb on - strand, within Psest_4146

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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4,327,755 + Psest_4144 0.30 +0.2
4,327,755 + Psest_4144 0.30 +1.3
4,327,756 - Psest_4144 0.30 +0.3
4,327,756 - Psest_4144 0.30 -2.5
4,327,881 + Psest_4144 0.39 -1.2
4,327,894 - Psest_4144 0.40 +0.9
4,328,057 + Psest_4144 0.52 +0.1
4,328,063 - Psest_4144 0.52 +0.1
4,328,472 + Psest_4144 0.82 -1.4
4,328,473 - Psest_4144 0.82 +0.0
4,328,475 + Psest_4144 0.82 +0.7
4,328,475 + Psest_4144 0.82 +0.4
4,328,476 - Psest_4144 0.82 +0.5
4,328,476 - Psest_4144 0.82 +0.4
4,328,476 - Psest_4144 0.82 -0.1
4,328,476 - Psest_4144 0.82 -0.1
4,328,476 - Psest_4144 0.82 +0.1
4,328,476 - Psest_4144 0.82 -0.4
4,328,476 - Psest_4144 0.82 -0.4
4,328,476 - Psest_4144 0.82 -0.1
4,328,476 - Psest_4144 0.82 +0.1
4,328,476 - Psest_4144 0.82 +0.8
4,328,693 - +0.1
4,328,695 - +0.0
4,328,829 + Psest_4145 0.10 +1.1
4,328,829 + Psest_4145 0.10 +2.1
4,329,144 - Psest_4145 0.38 +1.1
4,329,200 + Psest_4145 0.43 +1.1
4,329,224 + Psest_4145 0.46 +0.1
4,329,224 + Psest_4145 0.46 -0.9
4,329,225 - Psest_4145 0.46 +1.4
4,329,225 - Psest_4145 0.46 -1.4
4,329,614 + Psest_4145 0.81 +0.4
4,329,614 + Psest_4145 0.81 +0.4
4,329,615 - Psest_4145 0.81 -0.4
4,329,838 + +1.1
4,329,838 + +0.2
4,329,838 + +0.9
4,329,838 + -0.3
4,329,838 + -0.1
4,329,838 + -0.3
4,329,838 + -2.7
4,329,838 + +1.1
4,329,839 - -0.4
4,330,312 + Psest_4146 0.43 -0.9
4,330,312 + Psest_4146 0.43 +0.3
4,330,313 - Psest_4146 0.43 -0.6
4,330,313 - Psest_4146 0.43 +0.6
4,330,313 - Psest_4146 0.43 +1.1
4,330,534 + Psest_4146 0.63 -0.4
4,330,534 + Psest_4146 0.63 -2.2
4,330,535 - Psest_4146 0.63 +0.5
4,330,535 - Psest_4146 0.63 -0.3
4,330,645 + Psest_4146 0.73 -1.7
4,330,646 - Psest_4146 0.73 -0.0
4,330,646 - Psest_4146 0.73 +0.7
4,330,646 - Psest_4146 0.73 -0.4

Or see this region's nucleotide sequence