Experiment: Def sodium fluoride 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4144 and Psest_4145 overlap by 4 nucleotides Psest_4145 and Psest_4146 are separated by 8 nucleotides
Psest_4144: Psest_4144 - flagellar hook-associated protein FlgK, at 4,327,340 to 4,328,719
_4144
Psest_4145: Psest_4145 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 4,328,716 to 4,329,828
_4145
Psest_4146: Psest_4146 - Flagellar basal-body P-ring protein, at 4,329,837 to 4,330,949
_4146
Position (kb)
4328
4329
4330 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4327.755 kb on + strand, within Psest_4144 at 4327.755 kb on + strand, within Psest_4144 at 4327.756 kb on - strand, within Psest_4144 at 4327.756 kb on - strand, within Psest_4144 at 4327.881 kb on + strand, within Psest_4144 at 4327.894 kb on - strand, within Psest_4144 at 4328.057 kb on + strand, within Psest_4144 at 4328.063 kb on - strand, within Psest_4144 at 4328.472 kb on + strand, within Psest_4144 at 4328.473 kb on - strand, within Psest_4144 at 4328.475 kb on + strand, within Psest_4144 at 4328.475 kb on + strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.476 kb on - strand, within Psest_4144 at 4328.693 kb on - strand at 4328.695 kb on - strand at 4328.829 kb on + strand, within Psest_4145 at 4328.829 kb on + strand, within Psest_4145 at 4329.144 kb on - strand, within Psest_4145 at 4329.200 kb on + strand, within Psest_4145 at 4329.224 kb on + strand, within Psest_4145 at 4329.224 kb on + strand, within Psest_4145 at 4329.225 kb on - strand, within Psest_4145 at 4329.225 kb on - strand, within Psest_4145 at 4329.614 kb on + strand, within Psest_4145 at 4329.614 kb on + strand, within Psest_4145 at 4329.615 kb on - strand, within Psest_4145 at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.838 kb on + strand at 4329.839 kb on - strand at 4330.312 kb on + strand, within Psest_4146 at 4330.312 kb on + strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.534 kb on + strand, within Psest_4146 at 4330.534 kb on + strand, within Psest_4146 at 4330.535 kb on - strand, within Psest_4146 at 4330.535 kb on - strand, within Psest_4146 at 4330.645 kb on + strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146
Per-strain Table
Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM remove 4,327,755 + Psest_4144 0.30 +0.2 4,327,755 + Psest_4144 0.30 +1.3 4,327,756 - Psest_4144 0.30 +0.3 4,327,756 - Psest_4144 0.30 -2.5 4,327,881 + Psest_4144 0.39 -1.2 4,327,894 - Psest_4144 0.40 +0.9 4,328,057 + Psest_4144 0.52 +0.1 4,328,063 - Psest_4144 0.52 +0.1 4,328,472 + Psest_4144 0.82 -1.4 4,328,473 - Psest_4144 0.82 +0.0 4,328,475 + Psest_4144 0.82 +0.7 4,328,475 + Psest_4144 0.82 +0.4 4,328,476 - Psest_4144 0.82 +0.5 4,328,476 - Psest_4144 0.82 +0.4 4,328,476 - Psest_4144 0.82 -0.1 4,328,476 - Psest_4144 0.82 -0.1 4,328,476 - Psest_4144 0.82 +0.1 4,328,476 - Psest_4144 0.82 -0.4 4,328,476 - Psest_4144 0.82 -0.4 4,328,476 - Psest_4144 0.82 -0.1 4,328,476 - Psest_4144 0.82 +0.1 4,328,476 - Psest_4144 0.82 +0.8 4,328,693 - +0.1 4,328,695 - +0.0 4,328,829 + Psest_4145 0.10 +1.1 4,328,829 + Psest_4145 0.10 +2.1 4,329,144 - Psest_4145 0.38 +1.1 4,329,200 + Psest_4145 0.43 +1.1 4,329,224 + Psest_4145 0.46 +0.1 4,329,224 + Psest_4145 0.46 -0.9 4,329,225 - Psest_4145 0.46 +1.4 4,329,225 - Psest_4145 0.46 -1.4 4,329,614 + Psest_4145 0.81 +0.4 4,329,614 + Psest_4145 0.81 +0.4 4,329,615 - Psest_4145 0.81 -0.4 4,329,838 + +1.1 4,329,838 + +0.2 4,329,838 + +0.9 4,329,838 + -0.3 4,329,838 + -0.1 4,329,838 + -0.3 4,329,838 + -2.7 4,329,838 + +1.1 4,329,839 - -0.4 4,330,312 + Psest_4146 0.43 -0.9 4,330,312 + Psest_4146 0.43 +0.3 4,330,313 - Psest_4146 0.43 -0.6 4,330,313 - Psest_4146 0.43 +0.6 4,330,313 - Psest_4146 0.43 +1.1 4,330,534 + Psest_4146 0.63 -0.4 4,330,534 + Psest_4146 0.63 -2.2 4,330,535 - Psest_4146 0.63 +0.5 4,330,535 - Psest_4146 0.63 -0.3 4,330,645 + Psest_4146 0.73 -1.7 4,330,646 - Psest_4146 0.73 -0.0 4,330,646 - Psest_4146 0.73 +0.7 4,330,646 - Psest_4146 0.73 -0.4
Or see this region's nucleotide sequence