Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3904

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3902 and Psest_3903 are separated by 31 nucleotidesPsest_3903 and Psest_3904 overlap by 4 nucleotidesPsest_3904 and Psest_3905 overlap by 14 nucleotides Psest_3902: Psest_3902 - hypothetical protein, at 4,071,460 to 4,071,939 _3902 Psest_3903: Psest_3903 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 4,071,971 to 4,072,798 _3903 Psest_3904: Psest_3904 - hypothetical protein, at 4,072,795 to 4,073,802 _3904 Psest_3905: Psest_3905 - formate dehydrogenase, alpha subunit, archaeal-type, at 4,073,789 to 4,075,885 _3905 Position (kb) 4072 4073 4074Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4071.868 kb on + strand, within Psest_3902at 4071.907 kb on + strandat 4071.907 kb on + strandat 4071.907 kb on + strandat 4071.907 kb on + strandat 4071.907 kb on + strandat 4071.908 kb on - strandat 4071.908 kb on - strandat 4071.908 kb on - strandat 4071.908 kb on - strandat 4071.908 kb on - strandat 4071.910 kb on + strandat 4071.910 kb on + strandat 4071.910 kb on + strandat 4071.910 kb on + strandat 4071.910 kb on + strandat 4071.911 kb on - strandat 4071.911 kb on - strandat 4071.911 kb on - strandat 4071.911 kb on - strandat 4071.911 kb on - strandat 4071.956 kb on + strandat 4072.035 kb on + strandat 4072.035 kb on + strandat 4072.035 kb on + strandat 4072.074 kb on + strand, within Psest_3903at 4072.089 kb on + strand, within Psest_3903at 4072.089 kb on + strand, within Psest_3903at 4072.089 kb on + strand, within Psest_3903at 4072.089 kb on + strand, within Psest_3903at 4072.089 kb on + strand, within Psest_3903at 4072.090 kb on - strand, within Psest_3903at 4072.090 kb on - strand, within Psest_3903at 4072.090 kb on - strand, within Psest_3903at 4072.090 kb on - strand, within Psest_3903at 4072.090 kb on - strand, within Psest_3903at 4072.090 kb on - strand, within Psest_3903at 4072.090 kb on - strand, within Psest_3903at 4072.090 kb on - strand, within Psest_3903at 4072.090 kb on - strand, within Psest_3903at 4072.393 kb on - strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.629 kb on + strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.630 kb on - strand, within Psest_3903at 4072.755 kb on + strandat 4072.926 kb on - strand, within Psest_3904at 4073.471 kb on + strand, within Psest_3904at 4073.735 kb on + strandat 4073.897 kb on - strandat 4073.897 kb on - strandat 4074.436 kb on - strand, within Psest_3905

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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4,071,868 + Psest_3902 0.85 -1.4
4,071,907 + +1.1
4,071,907 + +1.7
4,071,907 + +0.1
4,071,907 + +2.6
4,071,907 + -0.3
4,071,908 - +0.1
4,071,908 - +0.2
4,071,908 - -0.1
4,071,908 - +0.8
4,071,908 - -0.3
4,071,910 + +1.7
4,071,910 + -0.4
4,071,910 + +0.7
4,071,910 + +0.8
4,071,910 + +1.1
4,071,911 - +0.5
4,071,911 - +0.9
4,071,911 - -1.3
4,071,911 - +0.6
4,071,911 - -3.2
4,071,956 + +2.7
4,072,035 + -0.9
4,072,035 + +2.7
4,072,035 + +1.1
4,072,074 + Psest_3903 0.12 +0.1
4,072,089 + Psest_3903 0.14 +1.1
4,072,089 + Psest_3903 0.14 +0.1
4,072,089 + Psest_3903 0.14 -1.7
4,072,089 + Psest_3903 0.14 +1.7
4,072,089 + Psest_3903 0.14 -0.6
4,072,090 - Psest_3903 0.14 +0.1
4,072,090 - Psest_3903 0.14 +1.5
4,072,090 - Psest_3903 0.14 +1.1
4,072,090 - Psest_3903 0.14 -0.4
4,072,090 - Psest_3903 0.14 -0.9
4,072,090 - Psest_3903 0.14 +0.7
4,072,090 - Psest_3903 0.14 -0.4
4,072,090 - Psest_3903 0.14 -2.1
4,072,090 - Psest_3903 0.14 +0.8
4,072,393 - Psest_3903 0.51 -0.1
4,072,629 + Psest_3903 0.79 +1.1
4,072,629 + Psest_3903 0.79 -0.9
4,072,629 + Psest_3903 0.79 +0.6
4,072,629 + Psest_3903 0.79 -0.4
4,072,629 + Psest_3903 0.79 +0.3
4,072,629 + Psest_3903 0.79 +2.0
4,072,629 + Psest_3903 0.79 +2.1
4,072,629 + Psest_3903 0.79 +1.1
4,072,629 + Psest_3903 0.79 -0.9
4,072,629 + Psest_3903 0.79 +0.3
4,072,629 + Psest_3903 0.79 +1.1
4,072,629 + Psest_3903 0.79 +0.1
4,072,629 + Psest_3903 0.79 -2.4
4,072,629 + Psest_3903 0.79 +0.9
4,072,630 - Psest_3903 0.80 +2.7
4,072,630 - Psest_3903 0.80 +0.1
4,072,630 - Psest_3903 0.80 -1.7
4,072,630 - Psest_3903 0.80 -0.4
4,072,630 - Psest_3903 0.80 +0.4
4,072,630 - Psest_3903 0.80 +1.1
4,072,630 - Psest_3903 0.80 +2.4
4,072,630 - Psest_3903 0.80 +0.8
4,072,630 - Psest_3903 0.80 +0.1
4,072,630 - Psest_3903 0.80 -0.3
4,072,630 - Psest_3903 0.80 +1.0
4,072,630 - Psest_3903 0.80 +0.4
4,072,630 - Psest_3903 0.80 -0.9
4,072,755 + +0.1
4,072,926 - Psest_3904 0.13 +1.1
4,073,471 + Psest_3904 0.67 +2.7
4,073,735 + +0.1
4,073,897 - +1.1
4,073,897 - +1.1
4,074,436 - Psest_3905 0.31 -0.1

Or see this region's nucleotide sequence