Experiment: Def sodium fluoride 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3902 and Psest_3903 are separated by 31 nucleotides Psest_3903 and Psest_3904 overlap by 4 nucleotides Psest_3904 and Psest_3905 overlap by 14 nucleotides
Psest_3902: Psest_3902 - hypothetical protein, at 4,071,460 to 4,071,939
_3902
Psest_3903: Psest_3903 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 4,071,971 to 4,072,798
_3903
Psest_3904: Psest_3904 - hypothetical protein, at 4,072,795 to 4,073,802
_3904
Psest_3905: Psest_3905 - formate dehydrogenase, alpha subunit, archaeal-type, at 4,073,789 to 4,075,885
_3905
Position (kb)
4072
4073
4074 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4071.868 kb on + strand, within Psest_3902 at 4071.907 kb on + strand at 4071.907 kb on + strand at 4071.907 kb on + strand at 4071.907 kb on + strand at 4071.907 kb on + strand at 4071.908 kb on - strand at 4071.908 kb on - strand at 4071.908 kb on - strand at 4071.908 kb on - strand at 4071.908 kb on - strand at 4071.910 kb on + strand at 4071.910 kb on + strand at 4071.910 kb on + strand at 4071.910 kb on + strand at 4071.910 kb on + strand at 4071.911 kb on - strand at 4071.911 kb on - strand at 4071.911 kb on - strand at 4071.911 kb on - strand at 4071.911 kb on - strand at 4071.956 kb on + strand at 4072.035 kb on + strand at 4072.035 kb on + strand at 4072.035 kb on + strand at 4072.074 kb on + strand, within Psest_3903 at 4072.089 kb on + strand, within Psest_3903 at 4072.089 kb on + strand, within Psest_3903 at 4072.089 kb on + strand, within Psest_3903 at 4072.089 kb on + strand, within Psest_3903 at 4072.089 kb on + strand, within Psest_3903 at 4072.090 kb on - strand, within Psest_3903 at 4072.090 kb on - strand, within Psest_3903 at 4072.090 kb on - strand, within Psest_3903 at 4072.090 kb on - strand, within Psest_3903 at 4072.090 kb on - strand, within Psest_3903 at 4072.090 kb on - strand, within Psest_3903 at 4072.090 kb on - strand, within Psest_3903 at 4072.090 kb on - strand, within Psest_3903 at 4072.090 kb on - strand, within Psest_3903 at 4072.393 kb on - strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.629 kb on + strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.630 kb on - strand, within Psest_3903 at 4072.755 kb on + strand at 4072.926 kb on - strand, within Psest_3904 at 4073.471 kb on + strand, within Psest_3904 at 4073.735 kb on + strand at 4073.897 kb on - strand at 4073.897 kb on - strand at 4074.436 kb on - strand, within Psest_3905
Per-strain Table
Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM remove 4,071,868 + Psest_3902 0.85 -1.4 4,071,907 + +1.1 4,071,907 + +1.7 4,071,907 + +0.1 4,071,907 + +2.6 4,071,907 + -0.3 4,071,908 - +0.1 4,071,908 - +0.2 4,071,908 - -0.1 4,071,908 - +0.8 4,071,908 - -0.3 4,071,910 + +1.7 4,071,910 + -0.4 4,071,910 + +0.7 4,071,910 + +0.8 4,071,910 + +1.1 4,071,911 - +0.5 4,071,911 - +0.9 4,071,911 - -1.3 4,071,911 - +0.6 4,071,911 - -3.2 4,071,956 + +2.7 4,072,035 + -0.9 4,072,035 + +2.7 4,072,035 + +1.1 4,072,074 + Psest_3903 0.12 +0.1 4,072,089 + Psest_3903 0.14 +1.1 4,072,089 + Psest_3903 0.14 +0.1 4,072,089 + Psest_3903 0.14 -1.7 4,072,089 + Psest_3903 0.14 +1.7 4,072,089 + Psest_3903 0.14 -0.6 4,072,090 - Psest_3903 0.14 +0.1 4,072,090 - Psest_3903 0.14 +1.5 4,072,090 - Psest_3903 0.14 +1.1 4,072,090 - Psest_3903 0.14 -0.4 4,072,090 - Psest_3903 0.14 -0.9 4,072,090 - Psest_3903 0.14 +0.7 4,072,090 - Psest_3903 0.14 -0.4 4,072,090 - Psest_3903 0.14 -2.1 4,072,090 - Psest_3903 0.14 +0.8 4,072,393 - Psest_3903 0.51 -0.1 4,072,629 + Psest_3903 0.79 +1.1 4,072,629 + Psest_3903 0.79 -0.9 4,072,629 + Psest_3903 0.79 +0.6 4,072,629 + Psest_3903 0.79 -0.4 4,072,629 + Psest_3903 0.79 +0.3 4,072,629 + Psest_3903 0.79 +2.0 4,072,629 + Psest_3903 0.79 +2.1 4,072,629 + Psest_3903 0.79 +1.1 4,072,629 + Psest_3903 0.79 -0.9 4,072,629 + Psest_3903 0.79 +0.3 4,072,629 + Psest_3903 0.79 +1.1 4,072,629 + Psest_3903 0.79 +0.1 4,072,629 + Psest_3903 0.79 -2.4 4,072,629 + Psest_3903 0.79 +0.9 4,072,630 - Psest_3903 0.80 +2.7 4,072,630 - Psest_3903 0.80 +0.1 4,072,630 - Psest_3903 0.80 -1.7 4,072,630 - Psest_3903 0.80 -0.4 4,072,630 - Psest_3903 0.80 +0.4 4,072,630 - Psest_3903 0.80 +1.1 4,072,630 - Psest_3903 0.80 +2.4 4,072,630 - Psest_3903 0.80 +0.8 4,072,630 - Psest_3903 0.80 +0.1 4,072,630 - Psest_3903 0.80 -0.3 4,072,630 - Psest_3903 0.80 +1.0 4,072,630 - Psest_3903 0.80 +0.4 4,072,630 - Psest_3903 0.80 -0.9 4,072,755 + +0.1 4,072,926 - Psest_3904 0.13 +1.1 4,073,471 + Psest_3904 0.67 +2.7 4,073,735 + +0.1 4,073,897 - +1.1 4,073,897 - +1.1 4,074,436 - Psest_3905 0.31 -0.1
Or see this region's nucleotide sequence