Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3803

Experiment: Def sodium fluoride 25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3802 and Psest_3803 are separated by 3 nucleotidesPsest_3803 and Psest_3804 are separated by 138 nucleotides Psest_3802: Psest_3802 - hypothetical protein, at 3,971,944 to 3,973,287 _3802 Psest_3803: Psest_3803 - DNA repair protein radc, at 3,973,291 to 3,973,965 _3803 Psest_3804: Psest_3804 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic, at 3,974,104 to 3,975,312 _3804 Position (kb) 3973 3974Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3972.301 kb on + strand, within Psest_3802at 3972.301 kb on + strand, within Psest_3802at 3972.302 kb on - strand, within Psest_3802at 3972.302 kb on - strand, within Psest_3802at 3972.379 kb on + strand, within Psest_3802at 3972.380 kb on - strand, within Psest_3802at 3972.397 kb on + strand, within Psest_3802at 3972.397 kb on + strand, within Psest_3802at 3972.397 kb on + strand, within Psest_3802at 3972.397 kb on + strand, within Psest_3802at 3972.397 kb on + strand, within Psest_3802at 3972.397 kb on + strand, within Psest_3802at 3972.398 kb on - strand, within Psest_3802at 3972.398 kb on - strand, within Psest_3802at 3972.398 kb on - strand, within Psest_3802at 3972.435 kb on - strand, within Psest_3802at 3972.833 kb on - strand, within Psest_3802at 3972.833 kb on - strand, within Psest_3802at 3972.833 kb on - strand, within Psest_3802at 3972.834 kb on + strand, within Psest_3802at 3972.863 kb on + strand, within Psest_3802at 3972.863 kb on + strand, within Psest_3802at 3972.864 kb on - strand, within Psest_3802at 3973.305 kb on - strandat 3973.447 kb on - strand, within Psest_3803at 3973.632 kb on - strand, within Psest_3803at 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.957 kb on + strandat 3973.958 kb on - strandat 3973.958 kb on - strandat 3974.014 kb on + strandat 3974.019 kb on + strandat 3974.103 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
remove
3,972,301 + Psest_3802 0.27 -0.0
3,972,301 + Psest_3802 0.27 +1.3
3,972,302 - Psest_3802 0.27 -0.8
3,972,302 - Psest_3802 0.27 +0.3
3,972,379 + Psest_3802 0.32 -0.8
3,972,380 - Psest_3802 0.32 -1.1
3,972,397 + Psest_3802 0.34 +0.9
3,972,397 + Psest_3802 0.34 +0.1
3,972,397 + Psest_3802 0.34 +0.5
3,972,397 + Psest_3802 0.34 +0.4
3,972,397 + Psest_3802 0.34 +0.6
3,972,397 + Psest_3802 0.34 -0.1
3,972,398 - Psest_3802 0.34 -0.5
3,972,398 - Psest_3802 0.34 +1.1
3,972,398 - Psest_3802 0.34 -0.8
3,972,435 - Psest_3802 0.37 -0.9
3,972,833 - Psest_3802 0.66 +0.7
3,972,833 - Psest_3802 0.66 +0.9
3,972,833 - Psest_3802 0.66 -0.8
3,972,834 + Psest_3802 0.66 -2.7
3,972,863 + Psest_3802 0.68 +0.7
3,972,863 + Psest_3802 0.68 -3.0
3,972,864 - Psest_3802 0.68 +2.0
3,973,305 - -0.4
3,973,447 - Psest_3803 0.23 +1.2
3,973,632 - Psest_3803 0.51 -0.2
3,973,957 + +0.8
3,973,957 + +1.4
3,973,957 + +1.8
3,973,957 + -0.7
3,973,957 + +0.5
3,973,957 + -1.2
3,973,957 + +2.1
3,973,957 + -1.0
3,973,957 + +1.1
3,973,957 + +0.5
3,973,957 + +0.5
3,973,957 + +0.5
3,973,957 + -1.7
3,973,957 + -0.9
3,973,957 + +0.0
3,973,957 + +1.0
3,973,958 - +0.2
3,973,958 - -1.3
3,974,014 + -0.5
3,974,019 + +0.6
3,974,103 + -0.9

Or see this region's nucleotide sequence