Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3697

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3695 and Psest_3696 overlap by 8 nucleotidesPsest_3696 and Psest_3697 overlap by 4 nucleotidesPsest_3697 and Psest_3698 overlap by 11 nucleotides Psest_3695: Psest_3695 - Histidine ammonia-lyase, at 3,858,736 to 3,860,268 _3695 Psest_3696: Psest_3696 - Predicted thioesterase, at 3,860,261 to 3,860,686 _3696 Psest_3697: Psest_3697 - Outer membrane lipoprotein carrier protein LolA., at 3,860,683 to 3,861,294 _3697 Psest_3698: Psest_3698 - Predicted exporter, at 3,861,284 to 3,863,632 _3698 Position (kb) 3860 3861 3862Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3859.724 kb on - strand, within Psest_3695at 3859.724 kb on - strand, within Psest_3695at 3859.826 kb on - strand, within Psest_3695at 3860.266 kb on + strandat 3860.278 kb on - strandat 3860.278 kb on - strandat 3860.352 kb on - strand, within Psest_3696at 3860.352 kb on - strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.361 kb on - strand, within Psest_3696at 3860.361 kb on - strand, within Psest_3696at 3860.361 kb on - strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.454 kb on + strand, within Psest_3696at 3860.454 kb on + strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.465 kb on + strand, within Psest_3696at 3860.465 kb on + strand, within Psest_3696at 3860.465 kb on + strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.503 kb on - strand, within Psest_3696at 3860.546 kb on + strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.805 kb on - strand, within Psest_3697at 3861.198 kb on - strand, within Psest_3697at 3861.198 kb on - strand, within Psest_3697at 3862.197 kb on + strand, within Psest_3698at 3862.197 kb on + strand, within Psest_3698at 3862.197 kb on + strand, within Psest_3698at 3862.197 kb on + strand, within Psest_3698at 3862.197 kb on + strand, within Psest_3698at 3862.256 kb on + strand, within Psest_3698at 3862.257 kb on - strand, within Psest_3698at 3862.257 kb on - strand, within Psest_3698

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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3,859,724 - Psest_3695 0.64 -1.7
3,859,724 - Psest_3695 0.64 +0.1
3,859,826 - Psest_3695 0.71 +0.8
3,860,266 + -0.2
3,860,278 - +0.5
3,860,278 - +0.8
3,860,352 - Psest_3696 0.21 +3.1
3,860,352 - Psest_3696 0.21 -0.9
3,860,360 + Psest_3696 0.23 +2.7
3,860,360 + Psest_3696 0.23 +0.6
3,860,360 + Psest_3696 0.23 +1.1
3,860,360 + Psest_3696 0.23 +0.2
3,860,361 - Psest_3696 0.23 -0.5
3,860,361 - Psest_3696 0.23 +0.5
3,860,361 - Psest_3696 0.23 -0.4
3,860,408 + Psest_3696 0.35 -0.2
3,860,408 + Psest_3696 0.35 +0.8
3,860,408 + Psest_3696 0.35 +0.6
3,860,408 + Psest_3696 0.35 -1.2
3,860,408 + Psest_3696 0.35 +1.1
3,860,409 - Psest_3696 0.35 -1.7
3,860,409 - Psest_3696 0.35 +0.5
3,860,409 - Psest_3696 0.35 +1.1
3,860,409 - Psest_3696 0.35 +0.5
3,860,454 + Psest_3696 0.45 +0.7
3,860,454 + Psest_3696 0.45 -0.5
3,860,455 - Psest_3696 0.46 -0.0
3,860,455 - Psest_3696 0.46 +0.1
3,860,455 - Psest_3696 0.46 +0.1
3,860,455 - Psest_3696 0.46 +2.1
3,860,455 - Psest_3696 0.46 -1.7
3,860,455 - Psest_3696 0.46 +0.3
3,860,465 + Psest_3696 0.48 +1.1
3,860,465 + Psest_3696 0.48 +1.5
3,860,465 + Psest_3696 0.48 +0.1
3,860,466 - Psest_3696 0.48 +0.1
3,860,466 - Psest_3696 0.48 +2.1
3,860,466 - Psest_3696 0.48 -2.1
3,860,466 - Psest_3696 0.48 +1.1
3,860,503 - Psest_3696 0.57 +1.7
3,860,546 + Psest_3696 0.67 +0.8
3,860,547 - Psest_3696 0.67 +0.1
3,860,547 - Psest_3696 0.67 -0.3
3,860,547 - Psest_3696 0.67 +1.1
3,860,547 - Psest_3696 0.67 -2.1
3,860,547 - Psest_3696 0.67 +0.1
3,860,805 - Psest_3697 0.20 +1.8
3,861,198 - Psest_3697 0.84 +1.7
3,861,198 - Psest_3697 0.84 +0.5
3,862,197 + Psest_3698 0.39 +1.7
3,862,197 + Psest_3698 0.39 +0.1
3,862,197 + Psest_3698 0.39 +0.6
3,862,197 + Psest_3698 0.39 -1.2
3,862,197 + Psest_3698 0.39 +1.1
3,862,256 + Psest_3698 0.41 -0.3
3,862,257 - Psest_3698 0.41 +0.1
3,862,257 - Psest_3698 0.41 +1.1

Or see this region's nucleotide sequence