Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3476

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3474 and Psest_3475 overlap by 4 nucleotidesPsest_3475 and Psest_3476 are separated by 50 nucleotidesPsest_3476 and Psest_3477 overlap by 7 nucleotides Psest_3474: Psest_3474 - Short-chain dehydrogenases of various substrate specificities, at 3,643,886 to 3,644,719 _3474 Psest_3475: Psest_3475 - hypothetical protein, at 3,644,716 to 3,645,366 _3475 Psest_3476: Psest_3476 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 3,645,417 to 3,646,076 _3476 Psest_3477: Psest_3477 - Signal transduction histidine kinase, at 3,646,070 to 3,647,509 _3477 Position (kb) 3645 3646 3647Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3644.586 kb on + strand, within Psest_3474at 3644.839 kb on + strand, within Psest_3475at 3644.840 kb on - strand, within Psest_3475at 3644.840 kb on - strand, within Psest_3475at 3644.840 kb on - strand, within Psest_3475at 3644.840 kb on - strand, within Psest_3475at 3644.937 kb on + strand, within Psest_3475at 3644.938 kb on - strand, within Psest_3475at 3645.074 kb on - strand, within Psest_3475at 3645.075 kb on + strand, within Psest_3475at 3645.094 kb on + strand, within Psest_3475at 3645.095 kb on - strand, within Psest_3475at 3645.095 kb on - strand, within Psest_3475at 3645.095 kb on - strand, within Psest_3475at 3645.199 kb on + strand, within Psest_3475at 3645.199 kb on + strand, within Psest_3475at 3645.199 kb on + strand, within Psest_3475at 3645.199 kb on + strand, within Psest_3475at 3645.199 kb on + strand, within Psest_3475at 3645.199 kb on + strand, within Psest_3475at 3645.199 kb on + strand, within Psest_3475at 3645.200 kb on - strand, within Psest_3475at 3645.200 kb on - strand, within Psest_3475at 3645.236 kb on - strand, within Psest_3475at 3645.844 kb on - strand, within Psest_3476at 3645.951 kb on + strand, within Psest_3476at 3646.334 kb on + strand, within Psest_3477at 3646.361 kb on + strand, within Psest_3477at 3646.361 kb on + strand, within Psest_3477at 3646.361 kb on + strand, within Psest_3477at 3646.362 kb on - strand, within Psest_3477at 3646.362 kb on - strand, within Psest_3477

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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3,644,586 + Psest_3474 0.84 +1.3
3,644,839 + Psest_3475 0.19 -0.6
3,644,840 - Psest_3475 0.19 -0.6
3,644,840 - Psest_3475 0.19 -0.8
3,644,840 - Psest_3475 0.19 +0.7
3,644,840 - Psest_3475 0.19 -1.3
3,644,937 + Psest_3475 0.34 -0.1
3,644,938 - Psest_3475 0.34 +1.2
3,645,074 - Psest_3475 0.55 +1.0
3,645,075 + Psest_3475 0.55 -0.5
3,645,094 + Psest_3475 0.58 +0.4
3,645,095 - Psest_3475 0.58 +0.7
3,645,095 - Psest_3475 0.58 -0.2
3,645,095 - Psest_3475 0.58 +1.7
3,645,199 + Psest_3475 0.74 +0.3
3,645,199 + Psest_3475 0.74 +1.0
3,645,199 + Psest_3475 0.74 -0.9
3,645,199 + Psest_3475 0.74 -0.0
3,645,199 + Psest_3475 0.74 -0.0
3,645,199 + Psest_3475 0.74 -2.0
3,645,199 + Psest_3475 0.74 +0.7
3,645,200 - Psest_3475 0.74 +1.0
3,645,200 - Psest_3475 0.74 -1.3
3,645,236 - Psest_3475 0.80 -1.2
3,645,844 - Psest_3476 0.65 -0.4
3,645,951 + Psest_3476 0.81 +1.1
3,646,334 + Psest_3477 0.18 +0.4
3,646,361 + Psest_3477 0.20 -0.0
3,646,361 + Psest_3477 0.20 -1.3
3,646,361 + Psest_3477 0.20 +3.0
3,646,362 - Psest_3477 0.20 -0.1
3,646,362 - Psest_3477 0.20 +0.4

Or see this region's nucleotide sequence