Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3447

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3445 and Psest_3446 overlap by 4 nucleotidesPsest_3446 and Psest_3447 are separated by 198 nucleotidesPsest_3447 and Psest_3448 overlap by 8 nucleotides Psest_3445: Psest_3445 - Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs, at 3,617,125 to 3,618,111 _3445 Psest_3446: Psest_3446 - Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs, at 3,618,108 to 3,618,620 _3446 Psest_3447: Psest_3447 - Uncharacterized MobA-related protein, at 3,618,819 to 3,619,409 _3447 Psest_3448: Psest_3448 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 3,619,402 to 3,620,376 _3448 Position (kb) 3618 3619 3620Strain fitness (log2 ratio) -2 -1 0 1 2at 3618.038 kb on + strandat 3618.038 kb on + strandat 3618.039 kb on - strandat 3618.095 kb on + strandat 3618.096 kb on - strandat 3618.253 kb on - strand, within Psest_3446at 3618.607 kb on + strandat 3618.607 kb on + strandat 3618.608 kb on - strandat 3618.671 kb on + strandat 3618.797 kb on + strandat 3619.000 kb on + strand, within Psest_3447at 3619.069 kb on + strand, within Psest_3447at 3619.501 kb on - strand, within Psest_3448at 3619.501 kb on - strandat 3619.625 kb on + strand, within Psest_3448at 3619.625 kb on + strand, within Psest_3448at 3619.625 kb on + strand, within Psest_3448at 3619.625 kb on + strand, within Psest_3448at 3619.625 kb on + strand, within Psest_3448at 3619.625 kb on + strand, within Psest_3448at 3619.626 kb on - strand, within Psest_3448at 3619.626 kb on - strand, within Psest_3448at 3619.790 kb on + strand, within Psest_3448at 3619.791 kb on - strand, within Psest_3448at 3619.817 kb on - strand, within Psest_3448at 3619.854 kb on - strand, within Psest_3448at 3619.920 kb on + strand, within Psest_3448at 3619.969 kb on + strand, within Psest_3448at 3619.969 kb on + strand, within Psest_3448at 3619.969 kb on + strand, within Psest_3448at 3619.970 kb on - strand, within Psest_3448at 3619.970 kb on - strand, within Psest_3448at 3619.970 kb on - strand, within Psest_3448at 3619.970 kb on - strand, within Psest_3448at 3619.970 kb on - strand, within Psest_3448at 3620.135 kb on + strand, within Psest_3448at 3620.135 kb on + strand, within Psest_3448at 3620.135 kb on + strand, within Psest_3448at 3620.136 kb on - strand, within Psest_3448at 3620.136 kb on - strand, within Psest_3448at 3620.303 kb on + strandat 3620.304 kb on - strandat 3620.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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3,618,038 + +1.0
3,618,038 + +0.3
3,618,039 - -0.1
3,618,095 + +0.6
3,618,096 - -1.0
3,618,253 - Psest_3446 0.28 -0.8
3,618,607 + -0.9
3,618,607 + -1.3
3,618,608 - -2.1
3,618,671 + -0.3
3,618,797 + -0.5
3,619,000 + Psest_3447 0.31 +2.0
3,619,069 + Psest_3447 0.42 -0.6
3,619,501 - Psest_3448 0.10 +1.0
3,619,501 - -0.0
3,619,625 + Psest_3448 0.23 +0.7
3,619,625 + Psest_3448 0.23 +0.6
3,619,625 + Psest_3448 0.23 -1.6
3,619,625 + Psest_3448 0.23 +0.3
3,619,625 + Psest_3448 0.23 -1.0
3,619,625 + Psest_3448 0.23 -0.6
3,619,626 - Psest_3448 0.23 -1.0
3,619,626 - Psest_3448 0.23 +0.1
3,619,790 + Psest_3448 0.40 -1.0
3,619,791 - Psest_3448 0.40 -0.3
3,619,817 - Psest_3448 0.43 -0.0
3,619,854 - Psest_3448 0.46 -1.2
3,619,920 + Psest_3448 0.53 +1.0
3,619,969 + Psest_3448 0.58 -0.8
3,619,969 + Psest_3448 0.58 -1.6
3,619,969 + Psest_3448 0.58 -1.0
3,619,970 - Psest_3448 0.58 -0.9
3,619,970 - Psest_3448 0.58 -0.0
3,619,970 - Psest_3448 0.58 +2.0
3,619,970 - Psest_3448 0.58 +0.7
3,619,970 - Psest_3448 0.58 -0.8
3,620,135 + Psest_3448 0.75 -1.8
3,620,135 + Psest_3448 0.75 +0.4
3,620,135 + Psest_3448 0.75 -0.0
3,620,136 - Psest_3448 0.75 +1.0
3,620,136 - Psest_3448 0.75 -0.3
3,620,303 + -0.4
3,620,304 - +0.5
3,620,304 - +1.0

Or see this region's nucleotide sequence