Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3307

Experiment: Def sodium fluoride 25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3305 and Psest_3306 overlap by 1 nucleotidesPsest_3306 and Psest_3307 overlap by 8 nucleotidesPsest_3307 and Psest_3308 are separated by 281 nucleotides Psest_3305: Psest_3305 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 3,470,863 to 3,471,321 _3305 Psest_3306: Psest_3306 - conserved hypothetical integral membrane protein, at 3,471,321 to 3,472,118 _3306 Psest_3307: Psest_3307 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 3,472,111 to 3,472,926 _3307 Psest_3308: Psest_3308 - KpsF/GutQ family protein, at 3,473,208 to 3,474,182 _3308 Position (kb) 3472 3473Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3471.192 kb on - strand, within Psest_3305at 3471.197 kb on + strand, within Psest_3305at 3471.197 kb on + strand, within Psest_3305at 3471.197 kb on + strand, within Psest_3305at 3471.198 kb on - strand, within Psest_3305at 3471.206 kb on + strand, within Psest_3305at 3471.207 kb on - strand, within Psest_3305at 3471.207 kb on - strand, within Psest_3305at 3471.207 kb on - strand, within Psest_3305at 3471.385 kb on + strandat 3471.385 kb on + strandat 3471.385 kb on + strandat 3471.385 kb on + strandat 3471.385 kb on + strandat 3471.385 kb on + strandat 3471.416 kb on + strand, within Psest_3306at 3471.416 kb on + strand, within Psest_3306at 3471.565 kb on + strand, within Psest_3306at 3471.615 kb on + strand, within Psest_3306at 3471.615 kb on + strand, within Psest_3306at 3471.682 kb on + strand, within Psest_3306at 3471.682 kb on + strand, within Psest_3306at 3471.682 kb on + strand, within Psest_3306at 3471.682 kb on + strand, within Psest_3306at 3471.682 kb on + strand, within Psest_3306at 3471.682 kb on + strand, within Psest_3306at 3471.682 kb on + strand, within Psest_3306at 3471.883 kb on + strand, within Psest_3306at 3472.112 kb on + strandat 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.280 kb on + strand, within Psest_3307at 3472.286 kb on + strand, within Psest_3307at 3472.286 kb on + strand, within Psest_3307at 3472.286 kb on + strand, within Psest_3307at 3472.286 kb on + strand, within Psest_3307at 3472.286 kb on + strand, within Psest_3307at 3472.332 kb on + strand, within Psest_3307at 3472.424 kb on + strand, within Psest_3307at 3472.424 kb on + strand, within Psest_3307at 3472.428 kb on + strand, within Psest_3307at 3472.428 kb on + strand, within Psest_3307at 3472.428 kb on + strand, within Psest_3307at 3472.852 kb on - strandat 3472.860 kb on + strandat 3472.861 kb on - strandat 3472.861 kb on - strandat 3472.861 kb on - strandat 3472.907 kb on + strandat 3473.012 kb on + strandat 3473.012 kb on + strandat 3473.013 kb on - strandat 3473.014 kb on + strandat 3473.014 kb on + strandat 3473.014 kb on + strandat 3473.014 kb on + strandat 3473.014 kb on + strandat 3473.014 kb on + strandat 3473.014 kb on + strandat 3473.015 kb on - strandat 3473.015 kb on - strandat 3473.015 kb on - strandat 3473.172 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
remove
3,471,192 - Psest_3305 0.72 +0.7
3,471,197 + Psest_3305 0.73 -1.9
3,471,197 + Psest_3305 0.73 +2.4
3,471,197 + Psest_3305 0.73 +0.1
3,471,198 - Psest_3305 0.73 -0.0
3,471,206 + Psest_3305 0.75 -0.7
3,471,207 - Psest_3305 0.75 +0.5
3,471,207 - Psest_3305 0.75 +0.1
3,471,207 - Psest_3305 0.75 +0.0
3,471,385 + +1.0
3,471,385 + +0.5
3,471,385 + -0.5
3,471,385 + +0.3
3,471,385 + +0.8
3,471,385 + +0.2
3,471,416 + Psest_3306 0.12 +0.6
3,471,416 + Psest_3306 0.12 -1.1
3,471,565 + Psest_3306 0.31 +1.3
3,471,615 + Psest_3306 0.37 +0.5
3,471,615 + Psest_3306 0.37 +0.3
3,471,682 + Psest_3306 0.45 +1.0
3,471,682 + Psest_3306 0.45 -0.2
3,471,682 + Psest_3306 0.45 +3.0
3,471,682 + Psest_3306 0.45 +0.7
3,471,682 + Psest_3306 0.45 +1.6
3,471,682 + Psest_3306 0.45 -0.3
3,471,682 + Psest_3306 0.45 +1.3
3,471,883 + Psest_3306 0.70 +0.6
3,472,112 + +0.4
3,472,280 + Psest_3307 0.21 +1.7
3,472,280 + Psest_3307 0.21 -1.0
3,472,280 + Psest_3307 0.21 -0.9
3,472,280 + Psest_3307 0.21 +0.5
3,472,280 + Psest_3307 0.21 +1.1
3,472,280 + Psest_3307 0.21 -0.6
3,472,280 + Psest_3307 0.21 +1.4
3,472,280 + Psest_3307 0.21 +0.4
3,472,280 + Psest_3307 0.21 +1.0
3,472,280 + Psest_3307 0.21 -1.0
3,472,280 + Psest_3307 0.21 +0.7
3,472,280 + Psest_3307 0.21 -0.1
3,472,280 + Psest_3307 0.21 -0.5
3,472,280 + Psest_3307 0.21 +0.8
3,472,280 + Psest_3307 0.21 -0.4
3,472,280 + Psest_3307 0.21 +1.3
3,472,280 + Psest_3307 0.21 -0.3
3,472,286 + Psest_3307 0.21 +2.1
3,472,286 + Psest_3307 0.21 +0.3
3,472,286 + Psest_3307 0.21 +1.0
3,472,286 + Psest_3307 0.21 +0.7
3,472,286 + Psest_3307 0.21 +0.3
3,472,332 + Psest_3307 0.27 +1.8
3,472,424 + Psest_3307 0.38 +0.1
3,472,424 + Psest_3307 0.38 +0.7
3,472,428 + Psest_3307 0.39 +0.8
3,472,428 + Psest_3307 0.39 +0.3
3,472,428 + Psest_3307 0.39 +1.7
3,472,852 - +0.7
3,472,860 + +0.0
3,472,861 - +0.7
3,472,861 - +0.2
3,472,861 - -0.5
3,472,907 + +0.2
3,473,012 + +0.8
3,473,012 + +1.0
3,473,013 - -1.6
3,473,014 + +0.2
3,473,014 + +0.9
3,473,014 + +0.0
3,473,014 + +0.6
3,473,014 + +0.8
3,473,014 + +0.3
3,473,014 + +0.3
3,473,015 - -1.2
3,473,015 - +1.0
3,473,015 - +0.4
3,473,172 + +0.4

Or see this region's nucleotide sequence