Experiment: Def sodium fluoride 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3145 and Psest_3146 overlap by 4 nucleotides Psest_3146 and Psest_3147 overlap by 1 nucleotides Psest_3147 and Psest_3148 overlap by 20 nucleotides Psest_3148 and Psest_3149 are separated by 10 nucleotides Psest_3149 and Psest_3150 overlap by 32 nucleotides Psest_3150 and Psest_3151 are separated by 319 nucleotides
Psest_3145: Psest_3145 - hypothetical protein, at 3,319,351 to 3,319,635
_3145
Psest_3146: Psest_3146 - hypothetical protein, at 3,319,632 to 3,319,844
_3146
Psest_3147: Psest_3147 - hypothetical protein, at 3,319,844 to 3,320,017
_3147
Psest_3148: Psest_3148 - hypothetical protein, at 3,319,998 to 3,320,177
_3148
Psest_3149: Psest_3149 - hypothetical protein, at 3,320,188 to 3,320,370
_3149
Psest_3150: Psest_3150 - hypothetical protein, at 3,320,339 to 3,321,598
_3150
Psest_3151: Psest_3151 - hypothetical protein, at 3,321,918 to 3,322,388
_3151
Position (kb)
3320
3321
3322 Strain fitness (log2 ratio)
-2
-1
0
1 at 3319.349 kb on + strand at 3319.454 kb on - strand, within Psest_3145 at 3319.587 kb on - strand, within Psest_3145 at 3319.689 kb on - strand, within Psest_3146 at 3319.768 kb on + strand, within Psest_3146 at 3319.793 kb on - strand, within Psest_3146 at 3319.827 kb on - strand at 3319.827 kb on - strand at 3319.827 kb on - strand at 3320.088 kb on - strand, within Psest_3148 at 3320.461 kb on + strand at 3320.540 kb on + strand, within Psest_3150 at 3320.541 kb on - strand, within Psest_3150 at 3320.638 kb on + strand, within Psest_3150 at 3320.665 kb on + strand, within Psest_3150 at 3320.666 kb on - strand, within Psest_3150 at 3320.679 kb on + strand, within Psest_3150 at 3320.701 kb on - strand, within Psest_3150 at 3320.736 kb on - strand, within Psest_3150 at 3320.802 kb on + strand, within Psest_3150 at 3320.904 kb on + strand, within Psest_3150 at 3320.904 kb on + strand, within Psest_3150 at 3320.925 kb on + strand, within Psest_3150 at 3320.981 kb on - strand, within Psest_3150 at 3321.037 kb on + strand, within Psest_3150 at 3321.080 kb on - strand, within Psest_3150 at 3321.194 kb on - strand, within Psest_3150 at 3321.242 kb on + strand, within Psest_3150 at 3321.363 kb on + strand, within Psest_3150 at 3321.364 kb on - strand, within Psest_3150 at 3321.391 kb on + strand, within Psest_3150 at 3321.514 kb on + strand at 3321.514 kb on + strand at 3321.514 kb on + strand at 3321.597 kb on - strand at 3321.649 kb on - strand at 3321.675 kb on - strand at 3321.675 kb on - strand at 3321.698 kb on - strand at 3321.932 kb on - strand at 3322.140 kb on + strand, within Psest_3151 at 3322.141 kb on - strand, within Psest_3151 at 3322.143 kb on - strand, within Psest_3151 at 3322.181 kb on + strand, within Psest_3151 at 3322.269 kb on + strand, within Psest_3151 at 3322.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM remove 3,319,349 + -1.7 3,319,454 - Psest_3145 0.36 +0.2 3,319,587 - Psest_3145 0.83 +0.2 3,319,689 - Psest_3146 0.27 +0.1 3,319,768 + Psest_3146 0.64 +0.4 3,319,793 - Psest_3146 0.76 -0.1 3,319,827 - +0.9 3,319,827 - -0.6 3,319,827 - +0.1 3,320,088 - Psest_3148 0.50 -0.2 3,320,461 + -0.1 3,320,540 + Psest_3150 0.16 +0.0 3,320,541 - Psest_3150 0.16 +0.3 3,320,638 + Psest_3150 0.24 +1.3 3,320,665 + Psest_3150 0.26 +1.0 3,320,666 - Psest_3150 0.26 +0.6 3,320,679 + Psest_3150 0.27 +0.1 3,320,701 - Psest_3150 0.29 +1.0 3,320,736 - Psest_3150 0.32 -2.2 3,320,802 + Psest_3150 0.37 +0.2 3,320,904 + Psest_3150 0.45 +0.9 3,320,904 + Psest_3150 0.45 +0.5 3,320,925 + Psest_3150 0.47 +0.5 3,320,981 - Psest_3150 0.51 -0.7 3,321,037 + Psest_3150 0.55 +0.8 3,321,080 - Psest_3150 0.59 +0.1 3,321,194 - Psest_3150 0.68 +0.8 3,321,242 + Psest_3150 0.72 +0.8 3,321,363 + Psest_3150 0.81 -0.0 3,321,364 - Psest_3150 0.81 -0.8 3,321,391 + Psest_3150 0.83 -1.1 3,321,514 + -0.1 3,321,514 + -0.6 3,321,514 + -0.2 3,321,597 - -0.0 3,321,649 - +0.1 3,321,675 - -0.6 3,321,675 - -0.7 3,321,698 - -0.4 3,321,932 - -0.0 3,322,140 + Psest_3151 0.47 -0.1 3,322,141 - Psest_3151 0.47 +0.4 3,322,143 - Psest_3151 0.48 -1.1 3,322,181 + Psest_3151 0.56 +0.3 3,322,269 + Psest_3151 0.75 -0.2 3,322,386 + -2.5
Or see this region's nucleotide sequence