Experiment: Def sodium fluoride 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3006 and Psest_3007 overlap by 1 nucleotides Psest_3007 and Psest_3008 are separated by 2 nucleotides Psest_3008 and Psest_3009 overlap by 4 nucleotides Psest_3009 and Psest_3010 overlap by 8 nucleotides
Psest_3006: Psest_3006 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 3,194,548 to 3,195,597
_3006
Psest_3007: Psest_3007 - Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase, at 3,195,597 to 3,196,115
_3007
Psest_3008: Psest_3008 - cobyric acid synthase CobQ, at 3,196,118 to 3,197,575
_3008
Psest_3009: Psest_3009 - L-threonine-O-3-phosphate decarboxylase, at 3,197,572 to 3,198,561
_3009
Psest_3010: Psest_3010 - cobalamin biosynthesis protein CobD, at 3,198,554 to 3,199,465
_3010
Position (kb)
3196
3197
3198 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3195.420 kb on + strand, within Psest_3006 at 3195.420 kb on + strand, within Psest_3006 at 3195.420 kb on + strand, within Psest_3006 at 3195.421 kb on - strand, within Psest_3006 at 3195.421 kb on - strand, within Psest_3006 at 3195.421 kb on - strand, within Psest_3006 at 3195.421 kb on - strand, within Psest_3006 at 3195.425 kb on - strand, within Psest_3006 at 3195.425 kb on - strand, within Psest_3006 at 3196.027 kb on + strand, within Psest_3007 at 3196.027 kb on + strand, within Psest_3007 at 3196.027 kb on + strand, within Psest_3007 at 3196.027 kb on + strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.028 kb on - strand, within Psest_3007 at 3196.218 kb on + strand at 3196.218 kb on + strand at 3196.302 kb on + strand, within Psest_3008 at 3196.302 kb on + strand, within Psest_3008 at 3196.303 kb on - strand, within Psest_3008 at 3196.303 kb on - strand, within Psest_3008 at 3196.754 kb on + strand, within Psest_3008 at 3196.754 kb on + strand, within Psest_3008 at 3196.755 kb on - strand, within Psest_3008 at 3197.260 kb on - strand, within Psest_3008 at 3197.260 kb on - strand, within Psest_3008 at 3198.276 kb on - strand, within Psest_3009 at 3198.467 kb on + strand at 3198.518 kb on + strand at 3198.561 kb on + strand at 3198.561 kb on + strand at 3198.562 kb on - strand at 3198.562 kb on - strand at 3198.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM remove 3,195,420 + Psest_3006 0.83 +1.9 3,195,420 + Psest_3006 0.83 -1.4 3,195,420 + Psest_3006 0.83 +0.9 3,195,421 - Psest_3006 0.83 +0.3 3,195,421 - Psest_3006 0.83 +0.3 3,195,421 - Psest_3006 0.83 -0.7 3,195,421 - Psest_3006 0.83 +1.5 3,195,425 - Psest_3006 0.84 +0.3 3,195,425 - Psest_3006 0.84 +0.3 3,196,027 + Psest_3007 0.83 +1.5 3,196,027 + Psest_3007 0.83 -0.5 3,196,027 + Psest_3007 0.83 +0.9 3,196,027 + Psest_3007 0.83 +1.0 3,196,028 - Psest_3007 0.83 +0.2 3,196,028 - Psest_3007 0.83 +0.6 3,196,028 - Psest_3007 0.83 -0.7 3,196,028 - Psest_3007 0.83 +1.6 3,196,028 - Psest_3007 0.83 +0.1 3,196,028 - Psest_3007 0.83 +0.9 3,196,028 - Psest_3007 0.83 +0.9 3,196,028 - Psest_3007 0.83 +0.9 3,196,028 - Psest_3007 0.83 +0.6 3,196,028 - Psest_3007 0.83 -0.9 3,196,028 - Psest_3007 0.83 -1.4 3,196,028 - Psest_3007 0.83 +0.3 3,196,028 - Psest_3007 0.83 -2.1 3,196,028 - Psest_3007 0.83 +0.4 3,196,218 + +0.1 3,196,218 + -0.7 3,196,302 + Psest_3008 0.13 +0.9 3,196,302 + Psest_3008 0.13 +1.2 3,196,303 - Psest_3008 0.13 -1.7 3,196,303 - Psest_3008 0.13 -0.9 3,196,754 + Psest_3008 0.44 +1.3 3,196,754 + Psest_3008 0.44 -0.1 3,196,755 - Psest_3008 0.44 +1.5 3,197,260 - Psest_3008 0.78 +1.3 3,197,260 - Psest_3008 0.78 +0.7 3,198,276 - Psest_3009 0.71 +0.4 3,198,467 + +1.9 3,198,518 + +2.5 3,198,561 + -0.1 3,198,561 + +0.9 3,198,562 - -1.3 3,198,562 - +0.4 3,198,562 - -0.5
Or see this region's nucleotide sequence