Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2768

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2766 and Psest_2767 are separated by 5 nucleotidesPsest_2767 and Psest_2768 are separated by 88 nucleotidesPsest_2768 and Psest_2769 are separated by 47 nucleotidesPsest_2769 and Psest_2770 are separated by 276 nucleotides Psest_2766: Psest_2766 - hypothetical protein, at 2,962,139 to 2,962,735 _2766 Psest_2767: Psest_2767 - Uncharacterized conserved protein, at 2,962,741 to 2,963,472 _2767 Psest_2768: Psest_2768 - Kef-type K+ transport systems, predicted NAD-binding component, at 2,963,561 to 2,964,349 _2768 Psest_2769: Psest_2769 - hypothetical protein, at 2,964,397 to 2,964,834 _2769 Psest_2770: Psest_2770 - Superfamily II DNA and RNA helicases, at 2,965,111 to 2,967,471 _2770 Position (kb) 2963 2964 2965Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2962.886 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.899 kb on - strand, within Psest_2767at 2962.899 kb on - strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2963.260 kb on + strand, within Psest_2767at 2963.260 kb on + strand, within Psest_2767at 2963.261 kb on - strand, within Psest_2767at 2963.261 kb on - strand, within Psest_2767at 2963.261 kb on - strand, within Psest_2767at 2963.592 kb on + strandat 2963.592 kb on + strandat 2963.592 kb on + strandat 2963.593 kb on - strandat 2963.593 kb on - strandat 2963.615 kb on + strandat 2963.615 kb on + strandat 2963.615 kb on + strandat 2963.615 kb on + strandat 2963.667 kb on + strand, within Psest_2768at 2963.685 kb on - strand, within Psest_2768at 2963.860 kb on - strand, within Psest_2768at 2964.084 kb on - strand, within Psest_2768at 2964.410 kb on + strandat 2964.449 kb on + strand, within Psest_2769at 2964.449 kb on + strand, within Psest_2769at 2964.449 kb on + strand, within Psest_2769at 2964.450 kb on - strand, within Psest_2769at 2964.542 kb on + strand, within Psest_2769at 2964.542 kb on + strand, within Psest_2769at 2964.543 kb on - strand, within Psest_2769at 2964.543 kb on - strand, within Psest_2769at 2964.543 kb on - strand, within Psest_2769at 2964.585 kb on - strand, within Psest_2769at 2964.585 kb on - strand, within Psest_2769at 2964.617 kb on + strand, within Psest_2769at 2964.680 kb on + strand, within Psest_2769at 2964.680 kb on + strand, within Psest_2769at 2964.680 kb on + strand, within Psest_2769at 2964.681 kb on - strand, within Psest_2769at 2964.681 kb on - strand, within Psest_2769at 2964.681 kb on - strand, within Psest_2769at 2964.681 kb on - strand, within Psest_2769at 2964.681 kb on - strand, within Psest_2769at 2964.809 kb on - strandat 2964.809 kb on - strandat 2964.838 kb on + strandat 2964.838 kb on + strandat 2964.838 kb on + strandat 2964.838 kb on + strandat 2964.839 kb on - strandat 2964.839 kb on - strandat 2964.839 kb on - strandat 2964.926 kb on + strandat 2964.926 kb on + strandat 2964.927 kb on - strandat 2965.022 kb on + strandat 2965.023 kb on - strandat 2965.023 kb on - strandat 2965.023 kb on - strandat 2965.077 kb on + strandat 2965.128 kb on + strandat 2965.129 kb on - strandat 2965.243 kb on + strandat 2965.243 kb on + strandat 2965.243 kb on + strandat 2965.243 kb on + strandat 2965.243 kb on + strandat 2965.243 kb on + strandat 2965.243 kb on + strandat 2965.243 kb on + strandat 2965.243 kb on + strandat 2965.244 kb on - strandat 2965.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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2,962,886 + Psest_2767 0.20 +0.4
2,962,898 + Psest_2767 0.21 +0.4
2,962,898 + Psest_2767 0.21 -0.8
2,962,898 + Psest_2767 0.21 -0.1
2,962,898 + Psest_2767 0.21 -0.1
2,962,899 - Psest_2767 0.22 +0.0
2,962,899 - Psest_2767 0.22 +1.2
2,962,902 + Psest_2767 0.22 -0.3
2,962,902 + Psest_2767 0.22 -1.2
2,962,902 + Psest_2767 0.22 +1.9
2,962,902 + Psest_2767 0.22 +0.4
2,962,902 + Psest_2767 0.22 -0.7
2,962,902 + Psest_2767 0.22 -0.2
2,962,902 + Psest_2767 0.22 -0.5
2,962,902 + Psest_2767 0.22 +0.4
2,962,902 + Psest_2767 0.22 +0.5
2,962,902 + Psest_2767 0.22 +0.0
2,962,902 + Psest_2767 0.22 -2.2
2,962,902 + Psest_2767 0.22 -0.4
2,962,902 + Psest_2767 0.22 -1.0
2,962,902 + Psest_2767 0.22 +0.1
2,962,902 + Psest_2767 0.22 +0.3
2,962,903 - Psest_2767 0.22 +1.4
2,962,903 - Psest_2767 0.22 -0.5
2,962,903 - Psest_2767 0.22 +0.6
2,962,903 - Psest_2767 0.22 -0.9
2,963,260 + Psest_2767 0.71 +0.7
2,963,260 + Psest_2767 0.71 +0.7
2,963,261 - Psest_2767 0.71 -3.6
2,963,261 - Psest_2767 0.71 -0.6
2,963,261 - Psest_2767 0.71 -0.7
2,963,592 + -0.3
2,963,592 + -1.0
2,963,592 + -1.7
2,963,593 - -1.0
2,963,593 - -0.2
2,963,615 + +0.3
2,963,615 + -0.4
2,963,615 + +0.4
2,963,615 + -0.8
2,963,667 + Psest_2768 0.13 +0.6
2,963,685 - Psest_2768 0.16 +0.5
2,963,860 - Psest_2768 0.38 +0.3
2,964,084 - Psest_2768 0.66 +0.3
2,964,410 + +0.2
2,964,449 + Psest_2769 0.12 -1.2
2,964,449 + Psest_2769 0.12 -0.4
2,964,449 + Psest_2769 0.12 -0.2
2,964,450 - Psest_2769 0.12 -0.0
2,964,542 + Psest_2769 0.33 -0.1
2,964,542 + Psest_2769 0.33 +0.0
2,964,543 - Psest_2769 0.33 -1.0
2,964,543 - Psest_2769 0.33 +0.7
2,964,543 - Psest_2769 0.33 -0.3
2,964,585 - Psest_2769 0.43 +1.8
2,964,585 - Psest_2769 0.43 -1.5
2,964,617 + Psest_2769 0.50 -1.1
2,964,680 + Psest_2769 0.65 +1.5
2,964,680 + Psest_2769 0.65 +1.2
2,964,680 + Psest_2769 0.65 -0.2
2,964,681 - Psest_2769 0.65 -2.0
2,964,681 - Psest_2769 0.65 -0.4
2,964,681 - Psest_2769 0.65 +0.5
2,964,681 - Psest_2769 0.65 -0.2
2,964,681 - Psest_2769 0.65 -0.6
2,964,809 - -0.0
2,964,809 - -0.4
2,964,838 + -0.4
2,964,838 + -0.2
2,964,838 + +0.8
2,964,838 + +0.1
2,964,839 - +1.6
2,964,839 - -1.4
2,964,839 - -2.0
2,964,926 + -2.0
2,964,926 + -0.1
2,964,927 - -0.6
2,965,022 + +0.8
2,965,023 - +0.1
2,965,023 - -1.0
2,965,023 - -0.9
2,965,077 + -0.3
2,965,128 + -2.0
2,965,129 - +1.2
2,965,243 + -0.2
2,965,243 + +0.1
2,965,243 + -0.7
2,965,243 + -0.5
2,965,243 + -1.3
2,965,243 + -0.5
2,965,243 + +0.4
2,965,243 + +0.1
2,965,243 + +0.2
2,965,244 - -1.3
2,965,244 - +0.5

Or see this region's nucleotide sequence