Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2747

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2746 and Psest_2747 are separated by 254 nucleotidesPsest_2747 and Psest_2748 are separated by 69 nucleotidesPsest_2748 and Psest_2749 overlap by 4 nucleotides Psest_2746: Psest_2746 - Protein of unknown function (DUF2855)., at 2,936,966 to 2,938,069 _2746 Psest_2747: Psest_2747 - Putative NADPH-quinone reductase (modulator of drug activity B), at 2,938,324 to 2,939,106 _2747 Psest_2748: Psest_2748 - Transcriptional regulator, at 2,939,176 to 2,940,081 _2748 Psest_2749: Psest_2749 - Predicted transcriptional regulators, at 2,940,078 to 2,940,461 _2749 Position (kb) 2938 2939 2940Strain fitness (log2 ratio) -2 -1 0 1 2at 2937.356 kb on + strand, within Psest_2746at 2937.356 kb on + strand, within Psest_2746at 2937.357 kb on - strand, within Psest_2746at 2937.366 kb on - strand, within Psest_2746at 2937.586 kb on + strand, within Psest_2746at 2937.587 kb on - strand, within Psest_2746at 2937.587 kb on - strand, within Psest_2746at 2937.613 kb on - strand, within Psest_2746at 2937.613 kb on - strand, within Psest_2746at 2937.689 kb on + strand, within Psest_2746at 2937.717 kb on + strand, within Psest_2746at 2937.717 kb on + strand, within Psest_2746at 2937.718 kb on - strand, within Psest_2746at 2937.795 kb on - strand, within Psest_2746at 2937.839 kb on + strand, within Psest_2746at 2937.839 kb on + strand, within Psest_2746at 2937.928 kb on + strand, within Psest_2746at 2937.939 kb on + strand, within Psest_2746at 2938.020 kb on + strandat 2938.020 kb on + strandat 2938.020 kb on + strandat 2938.030 kb on + strandat 2938.030 kb on + strandat 2938.092 kb on + strandat 2938.111 kb on - strandat 2938.139 kb on - strandat 2938.336 kb on + strandat 2938.336 kb on + strandat 2938.336 kb on + strandat 2938.336 kb on + strandat 2938.336 kb on + strandat 2938.337 kb on - strandat 2938.337 kb on - strandat 2938.337 kb on - strandat 2938.337 kb on - strandat 2938.337 kb on - strandat 2938.579 kb on + strand, within Psest_2747at 2938.579 kb on + strand, within Psest_2747at 2938.579 kb on + strand, within Psest_2747at 2938.579 kb on + strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.629 kb on - strand, within Psest_2747at 2938.740 kb on - strand, within Psest_2747at 2938.740 kb on - strand, within Psest_2747at 2938.758 kb on - strand, within Psest_2747at 2938.758 kb on - strand, within Psest_2747at 2938.758 kb on - strand, within Psest_2747at 2938.758 kb on - strand, within Psest_2747at 2938.988 kb on + strand, within Psest_2747at 2938.988 kb on + strand, within Psest_2747at 2938.988 kb on + strand, within Psest_2747at 2938.988 kb on + strand, within Psest_2747at 2938.989 kb on - strand, within Psest_2747at 2938.989 kb on - strand, within Psest_2747at 2939.087 kb on + strandat 2939.088 kb on - strandat 2939.088 kb on - strandat 2939.159 kb on + strandat 2939.172 kb on + strandat 2939.354 kb on + strand, within Psest_2748at 2939.704 kb on + strand, within Psest_2748at 2940.072 kb on + strandat 2940.072 kb on + strandat 2940.072 kb on + strandat 2940.079 kb on + strandat 2940.079 kb on + strandat 2940.080 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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2,937,356 + Psest_2746 0.35 +0.2
2,937,356 + Psest_2746 0.35 +0.2
2,937,357 - Psest_2746 0.35 +0.0
2,937,366 - Psest_2746 0.36 +0.4
2,937,586 + Psest_2746 0.56 +0.5
2,937,587 - Psest_2746 0.56 +0.2
2,937,587 - Psest_2746 0.56 -0.0
2,937,613 - Psest_2746 0.59 +0.6
2,937,613 - Psest_2746 0.59 -2.0
2,937,689 + Psest_2746 0.65 +0.2
2,937,717 + Psest_2746 0.68 -0.2
2,937,717 + Psest_2746 0.68 -0.2
2,937,718 - Psest_2746 0.68 +0.2
2,937,795 - Psest_2746 0.75 +0.4
2,937,839 + Psest_2746 0.79 -0.4
2,937,839 + Psest_2746 0.79 +2.2
2,937,928 + Psest_2746 0.87 +0.4
2,937,939 + Psest_2746 0.88 -1.3
2,938,020 + -0.6
2,938,020 + -1.1
2,938,020 + -2.3
2,938,030 + -0.6
2,938,030 + +0.2
2,938,092 + +0.0
2,938,111 - -0.3
2,938,139 - +0.3
2,938,336 + -0.1
2,938,336 + -0.4
2,938,336 + +0.0
2,938,336 + -0.9
2,938,336 + +0.2
2,938,337 - +1.2
2,938,337 - +1.4
2,938,337 - +0.7
2,938,337 - -0.1
2,938,337 - +0.8
2,938,579 + Psest_2747 0.33 +0.4
2,938,579 + Psest_2747 0.33 +0.2
2,938,579 + Psest_2747 0.33 +0.1
2,938,579 + Psest_2747 0.33 +0.1
2,938,580 - Psest_2747 0.33 -0.6
2,938,580 - Psest_2747 0.33 +0.9
2,938,580 - Psest_2747 0.33 -0.8
2,938,580 - Psest_2747 0.33 -1.2
2,938,580 - Psest_2747 0.33 +0.1
2,938,629 - Psest_2747 0.39 +0.2
2,938,740 - Psest_2747 0.53 +0.7
2,938,740 - Psest_2747 0.53 +0.1
2,938,758 - Psest_2747 0.55 +0.2
2,938,758 - Psest_2747 0.55 +0.3
2,938,758 - Psest_2747 0.55 +0.5
2,938,758 - Psest_2747 0.55 +0.6
2,938,988 + Psest_2747 0.85 -0.3
2,938,988 + Psest_2747 0.85 +0.2
2,938,988 + Psest_2747 0.85 -2.5
2,938,988 + Psest_2747 0.85 +0.4
2,938,989 - Psest_2747 0.85 +0.1
2,938,989 - Psest_2747 0.85 -0.5
2,939,087 + -1.1
2,939,088 - -1.2
2,939,088 - +0.1
2,939,159 + -0.3
2,939,172 + -0.0
2,939,354 + Psest_2748 0.20 -0.4
2,939,704 + Psest_2748 0.58 -0.2
2,940,072 + -1.3
2,940,072 + +0.2
2,940,072 + -0.8
2,940,079 + +0.1
2,940,079 + -0.2
2,940,080 - -0.2

Or see this region's nucleotide sequence