Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2668

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2667 and Psest_2668 overlap by 4 nucleotidesPsest_2668 and Psest_2669 are separated by 16 nucleotides Psest_2667: Psest_2667 - Uncharacterized protein involved in propionate catabolism, at 2,854,716 to 2,856,068 _2667 Psest_2668: Psest_2668 - Lactoylglutathione lyase and related lyases, at 2,856,065 to 2,856,568 _2668 Psest_2669: Psest_2669 - Acyl-CoA dehydrogenases, at 2,856,585 to 2,857,748 _2669 Position (kb) 2856 2857Strain fitness (log2 ratio) -2 -1 0 1 2at 2855.627 kb on - strand, within Psest_2667at 2855.839 kb on + strand, within Psest_2667at 2856.138 kb on + strand, within Psest_2668at 2856.138 kb on + strand, within Psest_2668at 2856.402 kb on + strand, within Psest_2668at 2856.403 kb on - strand, within Psest_2668at 2856.403 kb on - strand, within Psest_2668at 2856.403 kb on - strand, within Psest_2668at 2856.403 kb on - strand, within Psest_2668at 2856.403 kb on - strand, within Psest_2668at 2856.464 kb on - strand, within Psest_2668at 2856.464 kb on - strand, within Psest_2668at 2856.572 kb on - strandat 2856.625 kb on + strandat 2856.626 kb on - strandat 2856.626 kb on - strandat 2856.664 kb on + strandat 2856.779 kb on - strand, within Psest_2669at 2856.949 kb on + strand, within Psest_2669at 2856.949 kb on + strand, within Psest_2669at 2857.039 kb on + strand, within Psest_2669at 2857.040 kb on - strand, within Psest_2669at 2857.040 kb on - strand, within Psest_2669at 2857.275 kb on - strand, within Psest_2669at 2857.309 kb on + strand, within Psest_2669at 2857.309 kb on + strand, within Psest_2669at 2857.309 kb on + strand, within Psest_2669at 2857.309 kb on + strand, within Psest_2669at 2857.309 kb on + strand, within Psest_2669at 2857.309 kb on + strand, within Psest_2669at 2857.309 kb on + strand, within Psest_2669at 2857.309 kb on + strand, within Psest_2669at 2857.310 kb on - strand, within Psest_2669at 2857.310 kb on - strand, within Psest_2669at 2857.310 kb on - strand, within Psest_2669at 2857.310 kb on - strand, within Psest_2669at 2857.310 kb on - strand, within Psest_2669at 2857.310 kb on - strand, within Psest_2669at 2857.426 kb on + strand, within Psest_2669at 2857.426 kb on + strand, within Psest_2669at 2857.426 kb on + strand, within Psest_2669at 2857.427 kb on - strand, within Psest_2669at 2857.427 kb on - strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.477 kb on + strand, within Psest_2669at 2857.478 kb on - strand, within Psest_2669at 2857.478 kb on - strand, within Psest_2669at 2857.478 kb on - strand, within Psest_2669at 2857.478 kb on - strand, within Psest_2669at 2857.478 kb on - strand, within Psest_2669at 2857.478 kb on - strand, within Psest_2669at 2857.478 kb on - strand, within Psest_2669

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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2,855,627 - Psest_2667 0.67 +0.1
2,855,839 + Psest_2667 0.83 -0.2
2,856,138 + Psest_2668 0.14 -1.3
2,856,138 + Psest_2668 0.14 +0.7
2,856,402 + Psest_2668 0.67 -0.8
2,856,403 - Psest_2668 0.67 +0.1
2,856,403 - Psest_2668 0.67 +0.7
2,856,403 - Psest_2668 0.67 +0.8
2,856,403 - Psest_2668 0.67 +2.4
2,856,403 - Psest_2668 0.67 +1.8
2,856,464 - Psest_2668 0.79 -0.2
2,856,464 - Psest_2668 0.79 +0.4
2,856,572 - -0.2
2,856,625 + -0.8
2,856,626 - -0.5
2,856,626 - +1.1
2,856,664 + -0.3
2,856,779 - Psest_2669 0.17 +0.8
2,856,949 + Psest_2669 0.31 +0.2
2,856,949 + Psest_2669 0.31 +0.8
2,857,039 + Psest_2669 0.39 -0.6
2,857,040 - Psest_2669 0.39 -2.5
2,857,040 - Psest_2669 0.39 -0.3
2,857,275 - Psest_2669 0.59 -0.6
2,857,309 + Psest_2669 0.62 -1.4
2,857,309 + Psest_2669 0.62 +1.0
2,857,309 + Psest_2669 0.62 +0.8
2,857,309 + Psest_2669 0.62 +2.4
2,857,309 + Psest_2669 0.62 -0.4
2,857,309 + Psest_2669 0.62 -1.2
2,857,309 + Psest_2669 0.62 -0.2
2,857,309 + Psest_2669 0.62 +1.3
2,857,310 - Psest_2669 0.62 -1.1
2,857,310 - Psest_2669 0.62 +0.2
2,857,310 - Psest_2669 0.62 -2.0
2,857,310 - Psest_2669 0.62 +0.6
2,857,310 - Psest_2669 0.62 +0.1
2,857,310 - Psest_2669 0.62 -0.4
2,857,426 + Psest_2669 0.72 +2.3
2,857,426 + Psest_2669 0.72 +0.8
2,857,426 + Psest_2669 0.72 +0.1
2,857,427 - Psest_2669 0.72 -0.6
2,857,427 - Psest_2669 0.72 +0.6
2,857,477 + Psest_2669 0.77 -1.8
2,857,477 + Psest_2669 0.77 -0.4
2,857,477 + Psest_2669 0.77 -1.8
2,857,477 + Psest_2669 0.77 -0.2
2,857,477 + Psest_2669 0.77 +0.6
2,857,477 + Psest_2669 0.77 +1.2
2,857,477 + Psest_2669 0.77 +0.8
2,857,477 + Psest_2669 0.77 -1.2
2,857,477 + Psest_2669 0.77 +0.8
2,857,477 + Psest_2669 0.77 +0.8
2,857,477 + Psest_2669 0.77 +0.4
2,857,477 + Psest_2669 0.77 -0.8
2,857,477 + Psest_2669 0.77 +1.4
2,857,477 + Psest_2669 0.77 -1.2
2,857,477 + Psest_2669 0.77 -0.3
2,857,478 - Psest_2669 0.77 +0.4
2,857,478 - Psest_2669 0.77 +0.1
2,857,478 - Psest_2669 0.77 -0.2
2,857,478 - Psest_2669 0.77 +0.3
2,857,478 - Psest_2669 0.77 -1.0
2,857,478 - Psest_2669 0.77 +1.0
2,857,478 - Psest_2669 0.77 +0.5

Or see this region's nucleotide sequence