Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2447

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2446 and Psest_2447 are separated by 11 nucleotidesPsest_2447 and Psest_2448 are separated by 186 nucleotides Psest_2446: Psest_2446 - acetyl-CoA acetyltransferases, at 2,615,025 to 2,616,209 _2446 Psest_2447: Psest_2447 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,616,221 to 2,616,988 _2447 Psest_2448: Psest_2448 - AraC-type DNA-binding domain-containing proteins, at 2,617,175 to 2,618,242 _2448 Position (kb) 2616 2617Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2615.749 kb on + strand, within Psest_2446at 2615.836 kb on + strand, within Psest_2446at 2615.837 kb on - strand, within Psest_2446at 2615.837 kb on - strand, within Psest_2446at 2616.171 kb on - strandat 2616.190 kb on - strandat 2616.222 kb on + strandat 2616.223 kb on - strandat 2616.313 kb on - strand, within Psest_2447at 2616.410 kb on + strand, within Psest_2447at 2616.508 kb on - strand, within Psest_2447at 2616.508 kb on - strand, within Psest_2447at 2616.968 kb on + strandat 2616.968 kb on + strandat 2616.969 kb on - strandat 2616.969 kb on - strandat 2616.969 kb on - strandat 2616.969 kb on - strandat 2617.033 kb on - strandat 2617.225 kb on + strandat 2617.251 kb on + strandat 2617.252 kb on - strandat 2617.526 kb on + strand, within Psest_2448at 2617.526 kb on + strand, within Psest_2448at 2617.527 kb on - strand, within Psest_2448at 2617.680 kb on + strand, within Psest_2448at 2617.681 kb on - strand, within Psest_2448at 2617.681 kb on - strand, within Psest_2448at 2617.779 kb on + strand, within Psest_2448at 2617.779 kb on + strand, within Psest_2448at 2617.779 kb on + strand, within Psest_2448at 2617.780 kb on - strand, within Psest_2448

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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2,615,749 + Psest_2446 0.61 +1.3
2,615,836 + Psest_2446 0.68 +0.7
2,615,837 - Psest_2446 0.69 +0.7
2,615,837 - Psest_2446 0.69 +0.5
2,616,171 - +3.3
2,616,190 - +0.2
2,616,222 + +0.0
2,616,223 - +0.2
2,616,313 - Psest_2447 0.12 +0.0
2,616,410 + Psest_2447 0.25 -0.3
2,616,508 - Psest_2447 0.37 +1.7
2,616,508 - Psest_2447 0.37 +0.6
2,616,968 + -1.3
2,616,968 + -1.0
2,616,969 - +1.7
2,616,969 - -0.7
2,616,969 - -0.3
2,616,969 - +0.7
2,617,033 - +0.7
2,617,225 + -1.6
2,617,251 + -0.3
2,617,252 - -1.8
2,617,526 + Psest_2448 0.33 -0.5
2,617,526 + Psest_2448 0.33 +0.6
2,617,527 - Psest_2448 0.33 -0.4
2,617,680 + Psest_2448 0.47 -1.0
2,617,681 - Psest_2448 0.47 +2.3
2,617,681 - Psest_2448 0.47 +0.5
2,617,779 + Psest_2448 0.57 -0.4
2,617,779 + Psest_2448 0.57 -0.2
2,617,779 + Psest_2448 0.57 +0.5
2,617,780 - Psest_2448 0.57 +0.2

Or see this region's nucleotide sequence