Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2360

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2358 and Psest_2359 overlap by 4 nucleotidesPsest_2359 and Psest_2360 overlap by 4 nucleotidesPsest_2360 and Psest_2361 overlap by 4 nucleotidesPsest_2361 and Psest_2362 overlap by 4 nucleotides Psest_2358: Psest_2358 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,513,291 to 2,514,049 _2358 Psest_2359: Psest_2359 - Predicted permeases, at 2,514,046 to 2,514,930 _2359 Psest_2360: Psest_2360 - Uncharacterized protein, putative amidase, at 2,514,927 to 2,515,688 _2360 Psest_2361: Psest_2361 - Amidases related to nicotinamidase, at 2,515,685 to 2,516,341 _2361 Psest_2362: Psest_2362 - Zn-dependent hydrolases, including glyoxylases, at 2,516,338 to 2,517,120 _2362 Position (kb) 2514 2515 2516Strain fitness (log2 ratio) -2 -1 0 1 2at 2513.996 kb on + strandat 2513.996 kb on + strandat 2513.996 kb on + strandat 2513.996 kb on + strandat 2513.997 kb on - strandat 2514.169 kb on + strand, within Psest_2359at 2514.169 kb on + strand, within Psest_2359at 2514.170 kb on - strand, within Psest_2359at 2514.337 kb on + strand, within Psest_2359at 2514.337 kb on + strand, within Psest_2359at 2514.338 kb on - strand, within Psest_2359at 2514.338 kb on - strand, within Psest_2359at 2514.338 kb on - strand, within Psest_2359at 2515.278 kb on + strand, within Psest_2360at 2515.548 kb on + strand, within Psest_2360at 2515.548 kb on + strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.834 kb on - strand, within Psest_2361at 2516.387 kb on - strandat 2516.404 kb on - strandat 2516.504 kb on - strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.639 kb on + strand, within Psest_2362at 2516.640 kb on - strand, within Psest_2362at 2516.640 kb on - strand, within Psest_2362at 2516.640 kb on - strand, within Psest_2362at 2516.640 kb on - strand, within Psest_2362at 2516.640 kb on - strand, within Psest_2362at 2516.640 kb on - strand, within Psest_2362at 2516.640 kb on - strand, within Psest_2362

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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2,513,996 + -1.1
2,513,996 + -0.9
2,513,996 + +0.7
2,513,996 + -1.1
2,513,997 - -0.6
2,514,169 + Psest_2359 0.14 -0.7
2,514,169 + Psest_2359 0.14 +0.3
2,514,170 - Psest_2359 0.14 +0.2
2,514,337 + Psest_2359 0.33 -0.3
2,514,337 + Psest_2359 0.33 +1.1
2,514,338 - Psest_2359 0.33 +0.7
2,514,338 - Psest_2359 0.33 +0.6
2,514,338 - Psest_2359 0.33 +0.7
2,515,278 + Psest_2360 0.46 +0.4
2,515,548 + Psest_2360 0.81 +0.3
2,515,548 + Psest_2360 0.81 +1.3
2,515,549 - Psest_2360 0.82 +1.5
2,515,549 - Psest_2360 0.82 -2.1
2,515,549 - Psest_2360 0.82 +0.5
2,515,549 - Psest_2360 0.82 +0.7
2,515,549 - Psest_2360 0.82 +0.7
2,515,549 - Psest_2360 0.82 +0.7
2,515,549 - Psest_2360 0.82 +0.7
2,515,549 - Psest_2360 0.82 -0.6
2,515,549 - Psest_2360 0.82 +1.3
2,515,834 - Psest_2361 0.23 -1.6
2,516,387 - +1.1
2,516,404 - -0.3
2,516,504 - Psest_2362 0.21 +0.7
2,516,639 + Psest_2362 0.38 -1.3
2,516,639 + Psest_2362 0.38 +1.4
2,516,639 + Psest_2362 0.38 -0.9
2,516,639 + Psest_2362 0.38 -0.6
2,516,639 + Psest_2362 0.38 -0.1
2,516,639 + Psest_2362 0.38 -0.4
2,516,639 + Psest_2362 0.38 -0.9
2,516,639 + Psest_2362 0.38 -0.3
2,516,639 + Psest_2362 0.38 -0.8
2,516,639 + Psest_2362 0.38 +0.5
2,516,639 + Psest_2362 0.38 -2.7
2,516,639 + Psest_2362 0.38 -0.2
2,516,639 + Psest_2362 0.38 -2.1
2,516,639 + Psest_2362 0.38 -1.9
2,516,639 + Psest_2362 0.38 +0.1
2,516,640 - Psest_2362 0.39 +0.7
2,516,640 - Psest_2362 0.39 +0.1
2,516,640 - Psest_2362 0.39 -0.1
2,516,640 - Psest_2362 0.39 +0.4
2,516,640 - Psest_2362 0.39 +0.7
2,516,640 - Psest_2362 0.39 +0.7
2,516,640 - Psest_2362 0.39 +1.9

Or see this region's nucleotide sequence