Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1997

Experiment: Def sodium fluoride 25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1996 and Psest_1997 overlap by 14 nucleotidesPsest_1997 and Psest_1998 are separated by 17 nucleotidesPsest_1998 and Psest_1999 are separated by 113 nucleotides Psest_1996: Psest_1996 - glucose-6-phosphate 1-dehydrogenase, at 2,113,224 to 2,114,693 _1996 Psest_1997: Psest_1997 - 6-phosphogluconolactonase, at 2,114,680 to 2,115,393 _1997 Psest_1998: Psest_1998 - Entner-Doudoroff aldolase, at 2,115,411 to 2,116,055 _1998 Psest_1999: Psest_1999 - pseudouridine synthase, at 2,116,169 to 2,117,302 _1999 Position (kb) 2114 2115 2116Strain fitness (log2 ratio) -2 -1 0 1at 2113.734 kb on + strand, within Psest_1996at 2113.750 kb on - strand, within Psest_1996at 2113.750 kb on - strand, within Psest_1996at 2113.750 kb on - strand, within Psest_1996at 2113.753 kb on + strand, within Psest_1996at 2113.753 kb on + strand, within Psest_1996at 2113.753 kb on + strand, within Psest_1996at 2113.753 kb on + strand, within Psest_1996at 2113.753 kb on + strand, within Psest_1996at 2113.753 kb on + strand, within Psest_1996at 2113.753 kb on + strand, within Psest_1996at 2113.753 kb on + strand, within Psest_1996at 2113.753 kb on + strand, within Psest_1996at 2113.754 kb on - strand, within Psest_1996at 2113.754 kb on - strand, within Psest_1996at 2113.754 kb on - strand, within Psest_1996at 2113.754 kb on - strand, within Psest_1996at 2113.890 kb on + strand, within Psest_1996at 2113.992 kb on - strand, within Psest_1996at 2114.018 kb on - strand, within Psest_1996at 2114.079 kb on + strand, within Psest_1996at 2114.189 kb on + strand, within Psest_1996at 2114.189 kb on + strand, within Psest_1996at 2114.217 kb on + strand, within Psest_1996at 2114.218 kb on - strand, within Psest_1996at 2114.218 kb on - strand, within Psest_1996at 2114.218 kb on - strand, within Psest_1996at 2114.218 kb on - strand, within Psest_1996at 2114.289 kb on + strand, within Psest_1996at 2114.289 kb on + strand, within Psest_1996at 2114.290 kb on - strand, within Psest_1996at 2114.360 kb on + strand, within Psest_1996at 2114.360 kb on + strand, within Psest_1996at 2114.361 kb on - strand, within Psest_1996at 2114.361 kb on - strand, within Psest_1996at 2114.361 kb on - strand, within Psest_1996at 2114.406 kb on - strand, within Psest_1996at 2114.451 kb on + strand, within Psest_1996at 2114.451 kb on + strand, within Psest_1996at 2114.452 kb on - strand, within Psest_1996at 2114.478 kb on + strand, within Psest_1996at 2114.491 kb on + strand, within Psest_1996at 2114.491 kb on + strand, within Psest_1996at 2114.491 kb on + strand, within Psest_1996at 2114.492 kb on - strand, within Psest_1996at 2114.532 kb on - strand, within Psest_1996at 2114.975 kb on + strand, within Psest_1997at 2115.241 kb on + strand, within Psest_1997at 2115.252 kb on - strand, within Psest_1997at 2115.361 kb on + strandat 2115.362 kb on - strandat 2115.362 kb on - strandat 2115.379 kb on + strandat 2115.485 kb on - strand, within Psest_1998at 2115.764 kb on + strand, within Psest_1998at 2115.765 kb on - strand, within Psest_1998at 2115.926 kb on + strand, within Psest_1998at 2115.927 kb on - strand, within Psest_1998at 2115.927 kb on - strand, within Psest_1998at 2115.927 kb on - strand, within Psest_1998at 2115.931 kb on - strand, within Psest_1998at 2116.053 kb on + strandat 2116.103 kb on + strandat 2116.201 kb on - strandat 2116.201 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
remove
2,113,734 + Psest_1996 0.35 -2.4
2,113,750 - Psest_1996 0.36 +0.3
2,113,750 - Psest_1996 0.36 +0.2
2,113,750 - Psest_1996 0.36 -0.3
2,113,753 + Psest_1996 0.36 -0.3
2,113,753 + Psest_1996 0.36 +0.4
2,113,753 + Psest_1996 0.36 +0.2
2,113,753 + Psest_1996 0.36 -1.6
2,113,753 + Psest_1996 0.36 +0.9
2,113,753 + Psest_1996 0.36 +0.2
2,113,753 + Psest_1996 0.36 +0.1
2,113,753 + Psest_1996 0.36 +0.6
2,113,753 + Psest_1996 0.36 -0.3
2,113,754 - Psest_1996 0.36 -0.0
2,113,754 - Psest_1996 0.36 -1.7
2,113,754 - Psest_1996 0.36 +0.3
2,113,754 - Psest_1996 0.36 -1.3
2,113,890 + Psest_1996 0.45 -0.9
2,113,992 - Psest_1996 0.52 +0.7
2,114,018 - Psest_1996 0.54 -0.4
2,114,079 + Psest_1996 0.58 -0.0
2,114,189 + Psest_1996 0.66 -0.2
2,114,189 + Psest_1996 0.66 +1.5
2,114,217 + Psest_1996 0.68 -0.2
2,114,218 - Psest_1996 0.68 +0.0
2,114,218 - Psest_1996 0.68 +0.5
2,114,218 - Psest_1996 0.68 -0.1
2,114,218 - Psest_1996 0.68 +0.3
2,114,289 + Psest_1996 0.72 -0.3
2,114,289 + Psest_1996 0.72 +0.3
2,114,290 - Psest_1996 0.73 +0.6
2,114,360 + Psest_1996 0.77 +0.2
2,114,360 + Psest_1996 0.77 +0.4
2,114,361 - Psest_1996 0.77 +0.5
2,114,361 - Psest_1996 0.77 +0.7
2,114,361 - Psest_1996 0.77 +0.1
2,114,406 - Psest_1996 0.80 -0.3
2,114,451 + Psest_1996 0.83 -0.9
2,114,451 + Psest_1996 0.83 -0.2
2,114,452 - Psest_1996 0.84 -0.1
2,114,478 + Psest_1996 0.85 -0.0
2,114,491 + Psest_1996 0.86 +0.5
2,114,491 + Psest_1996 0.86 +0.5
2,114,491 + Psest_1996 0.86 -0.8
2,114,492 - Psest_1996 0.86 +0.1
2,114,532 - Psest_1996 0.89 -0.7
2,114,975 + Psest_1997 0.41 +0.9
2,115,241 + Psest_1997 0.79 +0.2
2,115,252 - Psest_1997 0.80 +0.4
2,115,361 + -0.0
2,115,362 - -0.3
2,115,362 - -0.2
2,115,379 + -0.5
2,115,485 - Psest_1998 0.11 -2.0
2,115,764 + Psest_1998 0.55 -1.0
2,115,765 - Psest_1998 0.55 +0.5
2,115,926 + Psest_1998 0.80 +0.5
2,115,927 - Psest_1998 0.80 +0.1
2,115,927 - Psest_1998 0.80 +0.7
2,115,927 - Psest_1998 0.80 -1.2
2,115,931 - Psest_1998 0.81 +0.6
2,116,053 + -0.1
2,116,103 + -0.5
2,116,201 - +0.3
2,116,201 - +0.3

Or see this region's nucleotide sequence