Experiment: Def sodium fluoride 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1996 and Psest_1997 overlap by 14 nucleotides Psest_1997 and Psest_1998 are separated by 17 nucleotides Psest_1998 and Psest_1999 are separated by 113 nucleotides
Psest_1996: Psest_1996 - glucose-6-phosphate 1-dehydrogenase, at 2,113,224 to 2,114,693
_1996
Psest_1997: Psest_1997 - 6-phosphogluconolactonase, at 2,114,680 to 2,115,393
_1997
Psest_1998: Psest_1998 - Entner-Doudoroff aldolase, at 2,115,411 to 2,116,055
_1998
Psest_1999: Psest_1999 - pseudouridine synthase, at 2,116,169 to 2,117,302
_1999
Position (kb)
2114
2115
2116 Strain fitness (log2 ratio)
-2
-1
0
1 at 2113.734 kb on + strand, within Psest_1996 at 2113.750 kb on - strand, within Psest_1996 at 2113.750 kb on - strand, within Psest_1996 at 2113.750 kb on - strand, within Psest_1996 at 2113.753 kb on + strand, within Psest_1996 at 2113.753 kb on + strand, within Psest_1996 at 2113.753 kb on + strand, within Psest_1996 at 2113.753 kb on + strand, within Psest_1996 at 2113.753 kb on + strand, within Psest_1996 at 2113.753 kb on + strand, within Psest_1996 at 2113.753 kb on + strand, within Psest_1996 at 2113.753 kb on + strand, within Psest_1996 at 2113.753 kb on + strand, within Psest_1996 at 2113.754 kb on - strand, within Psest_1996 at 2113.754 kb on - strand, within Psest_1996 at 2113.754 kb on - strand, within Psest_1996 at 2113.754 kb on - strand, within Psest_1996 at 2113.890 kb on + strand, within Psest_1996 at 2113.992 kb on - strand, within Psest_1996 at 2114.018 kb on - strand, within Psest_1996 at 2114.079 kb on + strand, within Psest_1996 at 2114.189 kb on + strand, within Psest_1996 at 2114.189 kb on + strand, within Psest_1996 at 2114.217 kb on + strand, within Psest_1996 at 2114.218 kb on - strand, within Psest_1996 at 2114.218 kb on - strand, within Psest_1996 at 2114.218 kb on - strand, within Psest_1996 at 2114.218 kb on - strand, within Psest_1996 at 2114.289 kb on + strand, within Psest_1996 at 2114.289 kb on + strand, within Psest_1996 at 2114.290 kb on - strand, within Psest_1996 at 2114.360 kb on + strand, within Psest_1996 at 2114.360 kb on + strand, within Psest_1996 at 2114.361 kb on - strand, within Psest_1996 at 2114.361 kb on - strand, within Psest_1996 at 2114.361 kb on - strand, within Psest_1996 at 2114.406 kb on - strand, within Psest_1996 at 2114.451 kb on + strand, within Psest_1996 at 2114.451 kb on + strand, within Psest_1996 at 2114.452 kb on - strand, within Psest_1996 at 2114.478 kb on + strand, within Psest_1996 at 2114.491 kb on + strand, within Psest_1996 at 2114.491 kb on + strand, within Psest_1996 at 2114.491 kb on + strand, within Psest_1996 at 2114.492 kb on - strand, within Psest_1996 at 2114.532 kb on - strand, within Psest_1996 at 2114.975 kb on + strand, within Psest_1997 at 2115.241 kb on + strand, within Psest_1997 at 2115.252 kb on - strand, within Psest_1997 at 2115.361 kb on + strand at 2115.362 kb on - strand at 2115.362 kb on - strand at 2115.379 kb on + strand at 2115.485 kb on - strand, within Psest_1998 at 2115.764 kb on + strand, within Psest_1998 at 2115.765 kb on - strand, within Psest_1998 at 2115.926 kb on + strand, within Psest_1998 at 2115.927 kb on - strand, within Psest_1998 at 2115.927 kb on - strand, within Psest_1998 at 2115.927 kb on - strand, within Psest_1998 at 2115.931 kb on - strand, within Psest_1998 at 2116.053 kb on + strand at 2116.103 kb on + strand at 2116.201 kb on - strand at 2116.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM remove 2,113,734 + Psest_1996 0.35 -2.4 2,113,750 - Psest_1996 0.36 +0.3 2,113,750 - Psest_1996 0.36 +0.2 2,113,750 - Psest_1996 0.36 -0.3 2,113,753 + Psest_1996 0.36 -0.3 2,113,753 + Psest_1996 0.36 +0.4 2,113,753 + Psest_1996 0.36 +0.2 2,113,753 + Psest_1996 0.36 -1.6 2,113,753 + Psest_1996 0.36 +0.9 2,113,753 + Psest_1996 0.36 +0.2 2,113,753 + Psest_1996 0.36 +0.1 2,113,753 + Psest_1996 0.36 +0.6 2,113,753 + Psest_1996 0.36 -0.3 2,113,754 - Psest_1996 0.36 -0.0 2,113,754 - Psest_1996 0.36 -1.7 2,113,754 - Psest_1996 0.36 +0.3 2,113,754 - Psest_1996 0.36 -1.3 2,113,890 + Psest_1996 0.45 -0.9 2,113,992 - Psest_1996 0.52 +0.7 2,114,018 - Psest_1996 0.54 -0.4 2,114,079 + Psest_1996 0.58 -0.0 2,114,189 + Psest_1996 0.66 -0.2 2,114,189 + Psest_1996 0.66 +1.5 2,114,217 + Psest_1996 0.68 -0.2 2,114,218 - Psest_1996 0.68 +0.0 2,114,218 - Psest_1996 0.68 +0.5 2,114,218 - Psest_1996 0.68 -0.1 2,114,218 - Psest_1996 0.68 +0.3 2,114,289 + Psest_1996 0.72 -0.3 2,114,289 + Psest_1996 0.72 +0.3 2,114,290 - Psest_1996 0.73 +0.6 2,114,360 + Psest_1996 0.77 +0.2 2,114,360 + Psest_1996 0.77 +0.4 2,114,361 - Psest_1996 0.77 +0.5 2,114,361 - Psest_1996 0.77 +0.7 2,114,361 - Psest_1996 0.77 +0.1 2,114,406 - Psest_1996 0.80 -0.3 2,114,451 + Psest_1996 0.83 -0.9 2,114,451 + Psest_1996 0.83 -0.2 2,114,452 - Psest_1996 0.84 -0.1 2,114,478 + Psest_1996 0.85 -0.0 2,114,491 + Psest_1996 0.86 +0.5 2,114,491 + Psest_1996 0.86 +0.5 2,114,491 + Psest_1996 0.86 -0.8 2,114,492 - Psest_1996 0.86 +0.1 2,114,532 - Psest_1996 0.89 -0.7 2,114,975 + Psest_1997 0.41 +0.9 2,115,241 + Psest_1997 0.79 +0.2 2,115,252 - Psest_1997 0.80 +0.4 2,115,361 + -0.0 2,115,362 - -0.3 2,115,362 - -0.2 2,115,379 + -0.5 2,115,485 - Psest_1998 0.11 -2.0 2,115,764 + Psest_1998 0.55 -1.0 2,115,765 - Psest_1998 0.55 +0.5 2,115,926 + Psest_1998 0.80 +0.5 2,115,927 - Psest_1998 0.80 +0.1 2,115,927 - Psest_1998 0.80 +0.7 2,115,927 - Psest_1998 0.80 -1.2 2,115,931 - Psest_1998 0.81 +0.6 2,116,053 + -0.1 2,116,103 + -0.5 2,116,201 - +0.3 2,116,201 - +0.3
Or see this region's nucleotide sequence