Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1602

Experiment: Def sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1601 and Psest_1602 overlap by 4 nucleotidesPsest_1602 and Psest_1603 are separated by 139 nucleotides Psest_1601: Psest_1601 - Signal transduction histidine kinase, at 1,704,503 to 1,705,825 _1601 Psest_1602: Psest_1602 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,705,822 to 1,706,499 _1602 Psest_1603: Psest_1603 - Thiol:disulfide interchange protein, at 1,706,639 to 1,708,375 _1603 Position (kb) 1705 1706 1707Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1705.553 kb on + strand, within Psest_1601at 1705.554 kb on - strand, within Psest_1601at 1705.554 kb on - strand, within Psest_1601at 1705.920 kb on + strand, within Psest_1602at 1706.100 kb on - strand, within Psest_1602at 1706.100 kb on - strand, within Psest_1602at 1706.208 kb on - strand, within Psest_1602at 1706.526 kb on + strandat 1706.544 kb on - strandat 1706.622 kb on + strandat 1706.623 kb on - strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.627 kb on - strandat 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.826 kb on - strand, within Psest_1603at 1706.928 kb on - strand, within Psest_1603at 1707.269 kb on + strand, within Psest_1603at 1707.269 kb on + strand, within Psest_1603at 1707.269 kb on + strand, within Psest_1603at 1707.269 kb on + strand, within Psest_1603at 1707.270 kb on - strand, within Psest_1603at 1707.270 kb on - strand, within Psest_1603at 1707.270 kb on - strand, within Psest_1603

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Per-strain Table

Position Strand Gene LocusTag Fraction Def sodium fluoride 25 mM
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1,705,553 + Psest_1601 0.79 +0.3
1,705,554 - Psest_1601 0.79 -2.0
1,705,554 - Psest_1601 0.79 +0.0
1,705,920 + Psest_1602 0.14 +2.9
1,706,100 - Psest_1602 0.41 +1.6
1,706,100 - Psest_1602 0.41 +0.9
1,706,208 - Psest_1602 0.57 -0.6
1,706,526 + -0.1
1,706,544 - +1.2
1,706,622 + -2.6
1,706,623 - -1.0
1,706,626 + -0.6
1,706,626 + +1.2
1,706,626 + +0.9
1,706,626 + +0.3
1,706,626 + -1.5
1,706,626 + +0.9
1,706,626 + +0.9
1,706,627 - +0.6
1,706,819 + Psest_1603 0.10 -0.1
1,706,819 + Psest_1603 0.10 +0.2
1,706,819 + Psest_1603 0.10 -0.1
1,706,819 + Psest_1603 0.10 -0.1
1,706,819 + Psest_1603 0.10 +2.2
1,706,820 - Psest_1603 0.10 +1.9
1,706,820 - Psest_1603 0.10 -0.0
1,706,820 - Psest_1603 0.10 +0.6
1,706,820 - Psest_1603 0.10 -0.1
1,706,820 - Psest_1603 0.10 -3.8
1,706,820 - Psest_1603 0.10 -0.1
1,706,826 - Psest_1603 0.11 +0.5
1,706,928 - Psest_1603 0.17 +0.1
1,707,269 + Psest_1603 0.36 +0.2
1,707,269 + Psest_1603 0.36 -0.1
1,707,269 + Psest_1603 0.36 +0.0
1,707,269 + Psest_1603 0.36 +0.9
1,707,270 - Psest_1603 0.36 -0.4
1,707,270 - Psest_1603 0.36 -1.0
1,707,270 - Psest_1603 0.36 -0.5

Or see this region's nucleotide sequence