Strain Fitness in Shewanella oneidensis MR-1 around SO4055

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
4,207,842	-	metF	SO4054	0.15	-3.8
4,207,878	+	metF	SO4054	0.19	-5.1
4,207,891	+	metF	SO4054	0.21	-6.6
4,207,927	-	metF	SO4054	0.25	-4.2
4,208,066	+	metF	SO4054	0.40	-4.6
4,208,066	+	metF	SO4054	0.40	-1.8
4,208,137	+	metF	SO4054	0.48	-4.0
4,208,145	-	metF	SO4054	0.49	-2.4
4,208,170	+	metF	SO4054	0.52	-3.5
4,208,218	+	metF	SO4054	0.57	-2.1
4,208,218	+	metF	SO4054	0.57	-4.0
4,208,226	-	metF	SO4054	0.58	-3.2
4,208,226	-	metF	SO4054	0.58	-4.6
4,208,228	+	metF	SO4054	0.58	-3.1
4,208,296	+	metF	SO4054	0.66	-5.4
4,208,316	-	metF	SO4054	0.68	-5.2
4,208,377	+	metF	SO4054	0.75	-3.5
4,208,424	-	metF	SO4054	0.80	-3.2
4,208,444	-	metF	SO4054	0.83	-5.1
4,208,452	+	metF	SO4054	0.83	-5.3
4,208,452	+	metF	SO4054	0.83	-6.6
4,208,460	-	metF	SO4054	0.84	-5.6
4,208,588	+				-3.5
4,208,926	+				-0.4
4,208,981	+				-0.8
4,208,993	+				-1.0
4,208,993	+				+0.6
4,208,998	+				-2.9
4,209,001	-				+0.5
4,209,006	-				+1.1
4,209,007	-				-3.2
4,209,009	+				-3.1
4,209,019	+				+1.7
4,209,030	+				-2.0
4,209,043	-				-2.2
4,209,189	+	metL	SO4055	0.15	-2.5
4,209,189	+	metL	SO4055	0.15	-1.5
4,209,189	+	metL	SO4055	0.15	-3.6
4,209,189	+	metL	SO4055	0.15	-3.9
4,209,189	+	metL	SO4055	0.15	-1.7
4,209,189	+	metL	SO4055	0.15	-1.5
4,209,189	+	metL	SO4055	0.15	-3.6
4,209,189	+	metL	SO4055	0.15	-3.6
4,209,189	+	metL	SO4055	0.15	-2.1
4,209,189	+	metL	SO4055	0.15	-1.9
4,209,197	-	metL	SO4055	0.15	-2.4
4,209,197	-	metL	SO4055	0.15	-2.5
4,209,197	-	metL	SO4055	0.15	-1.5
4,209,197	-	metL	SO4055	0.15	-1.4
4,209,197	-	metL	SO4055	0.15	-3.0
4,209,197	-	metL	SO4055	0.15	-2.4
4,209,197	-	metL	SO4055	0.15	-3.0
4,209,197	-	metL	SO4055	0.15	-2.3
4,209,197	-	metL	SO4055	0.15	-2.0
4,209,199	-	metL	SO4055	0.15	-2.6
4,209,312	+	metL	SO4055	0.20	-0.5
4,209,312	+	metL	SO4055	0.20	-4.3
4,209,320	-	metL	SO4055	0.20	-2.4
4,209,320	-	metL	SO4055	0.20	-4.1
4,209,334	+	metL	SO4055	0.21	-2.8
4,209,358	+	metL	SO4055	0.22	-2.5
4,209,431	+	metL	SO4055	0.25	-1.8
4,209,431	+	metL	SO4055	0.25	-2.1
4,209,439	-	metL	SO4055	0.25	-3.2
4,209,463	+	metL	SO4055	0.26	-4.1
4,209,531	+	metL	SO4055	0.29	-1.0
4,209,580	+	metL	SO4055	0.31	-0.6
4,209,635	-	metL	SO4055	0.33	+0.2
4,209,676	-	metL	SO4055	0.35	-4.6
4,209,676	-	metL	SO4055	0.35	-4.1
4,209,691	+	metL	SO4055	0.36	-2.8
4,209,707	+	metL	SO4055	0.36	-3.9
4,209,722	-	metL	SO4055	0.37	-2.9
4,209,769	-	metL	SO4055	0.39	-3.2
4,209,769	-	metL	SO4055	0.39	-5.3
4,209,769	-	metL	SO4055	0.39	-4.5
4,209,772	+	metL	SO4055	0.39	-1.8
4,209,780	-	metL	SO4055	0.39	-6.0
4,209,874	-	metL	SO4055	0.43	-3.2
4,209,894	-	metL	SO4055	0.44	+2.0
4,209,900	+	metL	SO4055	0.44	-3.7
4,209,932	-	metL	SO4055	0.46	+2.3
4,210,018	-	metL	SO4055	0.49	-2.7
4,210,133	+	metL	SO4055	0.54	-3.9
4,210,141	-	metL	SO4055	0.55	-3.6
4,210,220	-	metL	SO4055	0.58	-4.4
4,210,341	+	metL	SO4055	0.63	-2.4
4,210,349	-	metL	SO4055	0.63	-3.0
4,210,359	-	metL	SO4055	0.64	-3.8
4,210,373	-	metL	SO4055	0.64	-2.6
4,210,409	-	metL	SO4055	0.66	-3.3
4,210,418	+	metL	SO4055	0.66	-5.0
4,210,421	-	metL	SO4055	0.66	-4.4
4,210,426	-	metL	SO4055	0.66	-6.0
4,210,520	+	metL	SO4055	0.70	-3.6
4,210,541	+	metL	SO4055	0.71	-5.2
4,210,564	+	metL	SO4055	0.72	-3.2
4,210,573	-	metL	SO4055	0.73	-3.7
4,210,580	+	metL	SO4055	0.73	-3.5
4,210,621	-	metL	SO4055	0.75	-4.5
4,210,670	-	metL	SO4055	0.77	-2.6
4,210,706	-	metL	SO4055	0.78	-2.7
4,210,706	-	metL	SO4055	0.78	-4.1
4,210,720	+	metL	SO4055	0.79	-4.1
4,210,841	+	metL	SO4055	0.84	-3.5
4,210,851	+	metL	SO4055	0.84	-2.6
4,210,856	+	metL	SO4055	0.84	-3.4
4,210,859	-	metL	SO4055	0.85	-0.7
4,210,864	-	metL	SO4055	0.85	-2.7
4,210,864	-	metL	SO4055	0.85	-2.9
4,210,864	-	metL	SO4055	0.85	-4.1
4,210,866	+	metL	SO4055	0.85	-2.6
4,210,866	-	metL	SO4055	0.85	-3.8
4,210,874	-	metL	SO4055	0.85	-4.7
4,210,967	-	metL	SO4055	0.89	-2.7
4,210,993	-				-2.8
4,211,136	+				-2.1
4,211,144	-				-4.5
4,211,144	-				-2.3
4,211,270	-				-1.1
4,211,303	+				-4.9
4,211,377	-	metB	SO4056	0.12	-3.2
4,211,488	+	metB	SO4056	0.21	-3.2
4,211,495	+	metB	SO4056	0.21	-4.4
4,211,503	-	metB	SO4056	0.22	-5.7
4,211,591	+	metB	SO4056	0.30	-2.7
4,211,591	+	metB	SO4056	0.30	-3.6
4,211,591	+	metB	SO4056	0.30	-0.8
4,211,613	+	metB	SO4056	0.31	-1.7
4,211,621	-	metB	SO4056	0.32	-5.5
4,211,630	-	metB	SO4056	0.33	-3.1
4,211,637	-	metB	SO4056	0.34	-3.3
4,211,637	-	metB	SO4056	0.34	-1.4
4,211,723	-	metB	SO4056	0.41	-5.0
4,211,852	-	metB	SO4056	0.52	-3.3
4,211,881	+	metB	SO4056	0.54	-5.0
4,211,884	-	metB	SO4056	0.54	-4.8
4,211,912	-	metB	SO4056	0.57	-4.3
4,211,959	+	metB	SO4056	0.61	-5.3
4,211,959	+	metB	SO4056	0.61	-3.1
4,211,960	+	metB	SO4056	0.61	-4.7
4,211,960	+	metB	SO4056	0.61	-2.1
4,211,967	-	metB	SO4056	0.61	-5.6
4,211,967	-	metB	SO4056	0.61	-4.8
4,211,967	-	metB	SO4056	0.61	-3.9
4,211,968	-	metB	SO4056	0.62	-4.1
4,211,986	+	metB	SO4056	0.63	-1.8
4,211,986	+	metB	SO4056	0.63	-4.3
4,211,994	-	metB	SO4056	0.64	-4.0
4,212,186	-	metB	SO4056	0.80	-4.3