Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4036 and SO4037 overlap by 50 nucleotides SO4037 and SO4038 are separated by 174 nucleotides SO4038 and SO4039 are separated by 56 nucleotides SO4039 and SO4040 are separated by 23 nucleotides
SO4036: SO4036 - hypothetical protein (NCBI ptt file), at 4,192,136 to 4,192,666
SO4036
SO4037: SO4037 - hypothetical protein (NCBI ptt file), at 4,192,617 to 4,193,150
SO4037
SO4038: SO4038 - hypothetical protein (NCBI ptt file), at 4,193,325 to 4,193,837
SO4038
SO4039: SO4039 - hydrolase, haloacid dehalogenase-like family (NCBI ptt file), at 4,193,894 to 4,194,502
SO4039
SO4040: SO4040 - integral membrane domain protein (NCBI ptt file), at 4,194,526 to 4,195,575
SO4040
Position (kb) 4193
4194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4192.430 kb on - strand, within SO4036 at 4192.493 kb on + strand, within SO4036 at 4192.548 kb on + strand, within SO4036 at 4192.661 kb on + strand at 4192.669 kb on + strand at 4192.720 kb on + strand, within SO4037 at 4192.728 kb on - strand, within SO4037 at 4192.747 kb on + strand, within SO4037 at 4192.747 kb on + strand, within SO4037 at 4192.747 kb on + strand, within SO4037 at 4192.749 kb on + strand, within SO4037 at 4192.755 kb on - strand, within SO4037 at 4192.755 kb on - strand, within SO4037 at 4192.756 kb on - strand, within SO4037 at 4192.756 kb on - strand, within SO4037 at 4192.780 kb on - strand, within SO4037 at 4192.893 kb on + strand, within SO4037 at 4192.893 kb on + strand, within SO4037 at 4192.901 kb on - strand, within SO4037 at 4192.908 kb on + strand, within SO4037 at 4193.034 kb on + strand, within SO4037 at 4193.174 kb on - strand at 4193.424 kb on + strand, within SO4038 at 4193.507 kb on + strand, within SO4038 at 4193.575 kb on + strand, within SO4038 at 4193.580 kb on + strand, within SO4038 at 4193.631 kb on - strand, within SO4038 at 4193.697 kb on + strand, within SO4038 at 4193.709 kb on - strand, within SO4038 at 4193.736 kb on + strand, within SO4038 at 4193.744 kb on - strand, within SO4038 at 4193.763 kb on - strand, within SO4038 at 4193.953 kb on + strand at 4194.091 kb on - strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.136 kb on + strand, within SO4039 at 4194.144 kb on - strand, within SO4039 at 4194.144 kb on - strand, within SO4039 at 4194.144 kb on - strand, within SO4039 at 4194.144 kb on - strand, within SO4039 at 4194.144 kb on - strand, within SO4039 at 4194.405 kb on + strand, within SO4039 at 4194.490 kb on + strand at 4194.490 kb on + strand at 4194.519 kb on - strand at 4194.561 kb on - strand at 4194.585 kb on - strand at 4194.601 kb on + strand at 4194.619 kb on - strand at 4194.644 kb on + strand, within SO4040 at 4194.644 kb on + strand, within SO4040 at 4194.652 kb on - strand, within SO4040 at 4194.652 kb on - strand, within SO4040 at 4194.654 kb on - strand, within SO4040 at 4194.728 kb on + strand, within SO4040 at 4194.733 kb on + strand, within SO4040 at 4194.733 kb on + strand, within SO4040 at 4194.741 kb on - strand, within SO4040 at 4194.741 kb on - strand, within SO4040 at 4194.805 kb on + strand, within SO4040 at 4194.822 kb on + strand, within SO4040
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 4,192,430 - SO4036 0.55 +1.1 4,192,493 + SO4036 0.67 +0.6 4,192,548 + SO4036 0.78 +0.9 4,192,661 + -2.5 4,192,669 + -0.8 4,192,720 + SO4037 0.19 +0.0 4,192,728 - SO4037 0.21 +1.0 4,192,747 + SO4037 0.24 -0.4 4,192,747 + SO4037 0.24 +1.7 4,192,747 + SO4037 0.24 -2.5 4,192,749 + SO4037 0.25 -0.4 4,192,755 - SO4037 0.26 -0.5 4,192,755 - SO4037 0.26 -0.4 4,192,756 - SO4037 0.26 -0.6 4,192,756 - SO4037 0.26 +0.4 4,192,780 - SO4037 0.31 +0.2 4,192,893 + SO4037 0.52 -0.3 4,192,893 + SO4037 0.52 +1.6 4,192,901 - SO4037 0.53 +0.1 4,192,908 + SO4037 0.54 +0.4 4,193,034 + SO4037 0.78 +0.6 4,193,174 - +1.4 4,193,424 + SO4038 0.19 -0.3 4,193,507 + SO4038 0.35 -0.7 4,193,575 + SO4038 0.49 -1.6 4,193,580 + SO4038 0.50 -1.6 4,193,631 - SO4038 0.60 -0.9 4,193,697 + SO4038 0.73 +1.3 4,193,709 - SO4038 0.75 +0.4 4,193,736 + SO4038 0.80 -0.2 4,193,744 - SO4038 0.82 -1.0 4,193,763 - SO4038 0.85 +1.0 4,193,953 + +0.1 4,194,091 - SO4039 0.32 +1.4 4,194,136 + SO4039 0.40 -0.2 4,194,136 + SO4039 0.40 -0.7 4,194,136 + SO4039 0.40 -0.2 4,194,136 + SO4039 0.40 -1.8 4,194,136 + SO4039 0.40 +1.0 4,194,144 - SO4039 0.41 +0.2 4,194,144 - SO4039 0.41 +0.7 4,194,144 - SO4039 0.41 +0.2 4,194,144 - SO4039 0.41 +0.1 4,194,144 - SO4039 0.41 +0.1 4,194,405 + SO4039 0.84 +1.6 4,194,490 + +1.7 4,194,490 + +1.5 4,194,519 - +0.0 4,194,561 - +0.3 4,194,585 - +1.9 4,194,601 + +0.5 4,194,619 - +1.3 4,194,644 + SO4040 0.11 -0.7 4,194,644 + SO4040 0.11 -0.8 4,194,652 - SO4040 0.12 +0.5 4,194,652 - SO4040 0.12 +0.7 4,194,654 - SO4040 0.12 -1.6 4,194,728 + SO4040 0.19 +0.1 4,194,733 + SO4040 0.20 -0.3 4,194,733 + SO4040 0.20 -0.0 4,194,741 - SO4040 0.20 -0.9 4,194,741 - SO4040 0.20 +1.9 4,194,805 + SO4040 0.27 +1.6 4,194,822 + SO4040 0.28 -1.1
Or see this region's nucleotide sequence