Strain Fitness in Shewanella oneidensis MR-1 around SO3726

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
3,868,265	-	cysC	SO3723	0.35	-2.3
3,868,346	-	cysC	SO3723	0.48	-3.8
3,868,346	-	cysC	SO3723	0.48	-1.8
3,868,354	+	cysC	SO3723	0.50	-3.2
3,868,451	-	cysC	SO3723	0.65	-2.3
3,868,639	+				-4.9
3,868,653	+				-3.7
3,868,681	-				-0.3
3,868,681	-				-1.4
3,868,817	+				-1.5
3,868,860	-				-1.0
3,868,881	-		SO3725	0.13	-1.9
3,869,002	-		SO3725	0.51	+1.3
3,869,004	+		SO3725	0.51	-3.5
3,869,041	-		SO3725	0.63	-0.4
3,869,322	-				-2.1
3,869,433	+	cysN	SO3726	0.16	-4.1
3,869,433	+	cysN	SO3726	0.16	-0.7
3,869,433	+	cysN	SO3726	0.16	-1.6
3,869,433	+	cysN	SO3726	0.16	-3.9
3,869,441	-	cysN	SO3726	0.17	-0.9
3,869,441	-	cysN	SO3726	0.17	-3.6
3,869,441	-	cysN	SO3726	0.17	-3.1
3,869,441	-	cysN	SO3726	0.17	-5.7
3,869,530	+	cysN	SO3726	0.23	-5.1
3,869,570	+	cysN	SO3726	0.26	-5.1
3,869,660	+	cysN	SO3726	0.32	-4.4
3,869,662	+	cysN	SO3726	0.32	-2.3
3,869,670	-	cysN	SO3726	0.33	-4.1
3,870,288	+	cysN	SO3726	0.76	-3.2
3,870,288	+	cysN	SO3726	0.76	-2.7
3,870,288	+	cysN	SO3726	0.76	-4.5
3,870,288	+	cysN	SO3726	0.76	-2.4
3,870,296	-	cysN	SO3726	0.77	-4.1
3,870,296	-	cysN	SO3726	0.77	-4.1
3,870,438	+	cysN	SO3726	0.87	-3.2
3,870,439	-	cysN	SO3726	0.87	-2.6
3,870,518	-				-1.0
3,870,565	+				-2.3
3,870,574	-				-3.5
3,870,574	-				+0.1
3,870,974	+	cysD	SO3727	0.17	-3.9
3,870,974	+	cysD	SO3727	0.17	-1.6
3,870,982	-	cysD	SO3727	0.18	-3.6
3,871,082	-	cysD	SO3727	0.29	-3.8
3,871,228	-	cysD	SO3727	0.45	-3.8
3,871,306	-	cysD	SO3727	0.54	-2.7
3,871,364	+	cysD	SO3727	0.60	-0.7
3,871,404	-	cysD	SO3727	0.65	-6.1
3,871,404	-	cysD	SO3727	0.65	-4.0
3,871,404	-	cysD	SO3727	0.65	-4.2
3,871,428	-	cysD	SO3727	0.67	-4.2
3,871,505	+	cysD	SO3727	0.76	-4.1