Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0859 and SO0860 are separated by 58 nucleotides SO0860 and SO0861 are separated by 107 nucleotides
SO0859: SO0859 - sensory box histidine kinase/response regulator (NCBI ptt file), at 882,701 to 887,998
SO0859
SO0860: SO0860 - response regulator (NCBI ptt file), at 888,057 to 889,076
SO0860
SO0861: SO0861 - conserved hypothetical protein (NCBI ptt file), at 889,184 to 890,140
SO0861
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 887.088 kb on - strand, within SO0859 at 887.234 kb on + strand, within SO0859 at 887.250 kb on - strand, within SO0859 at 887.255 kb on + strand, within SO0859 at 887.299 kb on + strand, within SO0859 at 887.328 kb on + strand, within SO0859 at 887.328 kb on + strand, within SO0859 at 887.328 kb on + strand, within SO0859 at 887.328 kb on + strand, within SO0859 at 887.336 kb on - strand, within SO0859 at 887.336 kb on - strand, within SO0859 at 887.383 kb on + strand, within SO0859 at 887.447 kb on + strand, within SO0859 at 887.457 kb on - strand, within SO0859 at 887.582 kb on + strand at 887.590 kb on - strand at 887.714 kb on + strand at 887.890 kb on - strand at 887.911 kb on + strand at 887.911 kb on + strand at 887.916 kb on + strand at 887.919 kb on - strand at 887.919 kb on - strand at 888.026 kb on - strand at 888.142 kb on - strand at 888.171 kb on + strand, within SO0860 at 888.241 kb on + strand, within SO0860 at 888.249 kb on - strand, within SO0860 at 888.268 kb on - strand, within SO0860 at 888.321 kb on - strand, within SO0860 at 888.341 kb on - strand, within SO0860 at 888.341 kb on - strand at 888.407 kb on - strand, within SO0860 at 888.477 kb on - strand, within SO0860 at 888.534 kb on + strand, within SO0860 at 888.535 kb on - strand, within SO0860 at 888.546 kb on + strand, within SO0860 at 888.554 kb on - strand, within SO0860 at 888.554 kb on - strand, within SO0860 at 888.629 kb on + strand, within SO0860 at 888.635 kb on + strand, within SO0860 at 888.637 kb on - strand, within SO0860 at 888.643 kb on - strand, within SO0860 at 888.746 kb on - strand, within SO0860 at 888.850 kb on - strand, within SO0860 at 888.931 kb on + strand, within SO0860 at 888.939 kb on - strand, within SO0860 at 888.941 kb on + strand, within SO0860 at 888.941 kb on + strand, within SO0860 at 888.941 kb on + strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 889.141 kb on - strand at 889.181 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 887,088 - SO0859 0.83 +0.4 887,234 + SO0859 0.86 -0.1 887,250 - SO0859 0.86 -0.4 887,255 + SO0859 0.86 -0.0 887,299 + SO0859 0.87 -2.3 887,328 + SO0859 0.87 +0.6 887,328 + SO0859 0.87 +0.3 887,328 + SO0859 0.87 -0.6 887,328 + SO0859 0.87 +0.7 887,336 - SO0859 0.87 -0.1 887,336 - SO0859 0.87 +1.1 887,383 + SO0859 0.88 -1.3 887,447 + SO0859 0.90 +1.9 887,457 - SO0859 0.90 -0.5 887,582 + -0.7 887,590 - -0.3 887,714 + +1.3 887,890 - +0.7 887,911 + +2.0 887,911 + +0.3 887,916 + -0.4 887,919 - +0.4 887,919 - +0.2 888,026 - -0.6 888,142 - +0.7 888,171 + SO0860 0.11 +0.3 888,241 + SO0860 0.18 -1.4 888,249 - SO0860 0.19 -0.2 888,268 - SO0860 0.21 -0.1 888,321 - SO0860 0.26 +0.2 888,341 - SO0860 0.28 -1.3 888,341 - +0.5 888,407 - SO0860 0.34 -0.5 888,477 - SO0860 0.41 +0.1 888,534 + SO0860 0.47 -0.2 888,535 - SO0860 0.47 -1.2 888,546 + SO0860 0.48 -0.2 888,554 - SO0860 0.49 +0.6 888,554 - SO0860 0.49 -0.9 888,629 + SO0860 0.56 -0.1 888,635 + SO0860 0.57 +0.3 888,637 - SO0860 0.57 +0.4 888,643 - SO0860 0.57 +0.4 888,746 - SO0860 0.68 -0.7 888,850 - SO0860 0.78 +0.0 888,931 + SO0860 0.86 -0.0 888,939 - SO0860 0.86 +0.3 888,941 + SO0860 0.87 +0.4 888,941 + SO0860 0.87 +0.0 888,941 + SO0860 0.87 -1.6 888,949 - SO0860 0.87 +0.9 888,949 - SO0860 0.87 -0.4 888,949 - SO0860 0.87 +0.8 888,949 - SO0860 0.87 -0.3 888,949 - SO0860 0.87 -0.4 889,141 - +1.5 889,181 + +0.5
Or see this region's nucleotide sequence