Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0392 and fis are separated by 240 nucleotides fis and SO0394 are separated by 16 nucleotides SO0394 and prmA are separated by 175 nucleotides
SO0392: SO0392 - lipoprotein, putative (NCBI ptt file), at 406,055 to 406,657
SO0392
SO0393: fis - DNA-binding protein Fis (NCBI ptt file), at 406,898 to 407,203
fis
SO0394: SO0394 - conserved hypothetical protein (NCBI ptt file), at 407,220 to 408,188
SO0394
SO0395: prmA - ribosomal protein L11 methyltransferase (NCBI ptt file), at 408,364 to 409,245
prmA
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 406.240 kb on - strand, within SO0392 at 406.240 kb on - strand, within SO0392 at 406.306 kb on + strand, within SO0392 at 406.314 kb on - strand, within SO0392 at 406.314 kb on - strand, within SO0392 at 406.333 kb on + strand, within SO0392 at 406.333 kb on + strand, within SO0392 at 406.334 kb on - strand, within SO0392 at 406.339 kb on - strand, within SO0392 at 406.351 kb on - strand, within SO0392 at 406.396 kb on + strand, within SO0392 at 406.404 kb on - strand, within SO0392 at 406.437 kb on - strand, within SO0392 at 406.439 kb on + strand, within SO0392 at 406.447 kb on - strand, within SO0392 at 406.499 kb on - strand, within SO0392 at 406.533 kb on + strand, within SO0392 at 406.537 kb on - strand, within SO0392 at 406.547 kb on + strand, within SO0392 at 406.555 kb on - strand, within SO0392 at 406.729 kb on + strand at 406.747 kb on - strand at 406.748 kb on + strand at 406.753 kb on + strand at 406.755 kb on + strand at 406.756 kb on - strand at 406.786 kb on + strand at 406.786 kb on + strand at 406.794 kb on - strand at 406.881 kb on + strand at 407.055 kb on - strand, within fis at 407.132 kb on - strand, within fis at 407.160 kb on + strand, within fis at 407.278 kb on + strand at 407.286 kb on - strand at 407.462 kb on + strand, within SO0394 at 407.462 kb on + strand, within SO0394 at 407.470 kb on - strand, within SO0394 at 407.542 kb on + strand, within SO0394 at 407.550 kb on - strand, within SO0394 at 407.550 kb on - strand, within SO0394 at 407.555 kb on - strand, within SO0394 at 407.742 kb on + strand, within SO0394 at 407.762 kb on - strand, within SO0394 at 407.789 kb on + strand, within SO0394 at 407.797 kb on - strand, within SO0394 at 407.852 kb on - strand, within SO0394 at 407.857 kb on - strand, within SO0394 at 407.929 kb on + strand, within SO0394 at 407.952 kb on + strand, within SO0394 at 408.078 kb on + strand, within SO0394 at 408.216 kb on - strand at 408.216 kb on - strand at 408.216 kb on - strand at 408.356 kb on + strand at 408.418 kb on - strand at 408.486 kb on + strand, within prmA at 408.500 kb on + strand, within prmA at 408.515 kb on + strand, within prmA at 408.523 kb on - strand, within prmA at 408.538 kb on + strand, within prmA at 408.610 kb on + strand, within prmA at 408.610 kb on - strand, within prmA at 408.614 kb on - strand, within prmA at 408.749 kb on - strand, within prmA at 408.772 kb on + strand, within prmA at 408.777 kb on + strand, within prmA at 408.785 kb on - strand, within prmA at 408.785 kb on - strand, within prmA at 408.795 kb on + strand, within prmA at 408.795 kb on + strand, within prmA at 408.805 kb on - strand, within prmA at 408.812 kb on + strand, within prmA at 408.812 kb on + strand, within prmA at 408.812 kb on + strand, within prmA at 408.820 kb on - strand, within prmA at 408.820 kb on - strand, within prmA at 408.820 kb on - strand, within prmA at 408.820 kb on - strand, within prmA at 408.840 kb on - strand, within prmA at 408.866 kb on + strand, within prmA at 408.893 kb on - strand, within prmA at 408.895 kb on + strand, within prmA at 408.989 kb on - strand, within prmA at 409.022 kb on + strand, within prmA at 409.032 kb on + strand, within prmA at 409.032 kb on + strand, within prmA at 409.069 kb on - strand, within prmA at 409.143 kb on - strand, within prmA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 406,240 - SO0392 0.31 -0.8 406,240 - SO0392 0.31 +0.4 406,306 + SO0392 0.42 -0.3 406,314 - SO0392 0.43 +0.2 406,314 - SO0392 0.43 -0.0 406,333 + SO0392 0.46 +0.4 406,333 + SO0392 0.46 +0.2 406,334 - SO0392 0.46 -0.3 406,339 - SO0392 0.47 +0.6 406,351 - SO0392 0.49 +0.1 406,396 + SO0392 0.57 +0.2 406,404 - SO0392 0.58 +0.9 406,437 - SO0392 0.63 +0.3 406,439 + SO0392 0.64 -0.8 406,447 - SO0392 0.65 -0.9 406,499 - SO0392 0.74 +0.6 406,533 + SO0392 0.79 +0.6 406,537 - SO0392 0.80 +0.1 406,547 + SO0392 0.82 -0.1 406,555 - SO0392 0.83 +0.7 406,729 + -0.5 406,747 - +0.2 406,748 + -0.3 406,753 + +0.8 406,755 + +0.0 406,756 - +0.9 406,786 + +1.6 406,786 + +0.6 406,794 - -0.7 406,881 + -1.0 407,055 - fis SO0393 0.51 +0.8 407,132 - fis SO0393 0.76 -0.6 407,160 + fis SO0393 0.86 -0.9 407,278 + -1.4 407,286 - -1.5 407,462 + SO0394 0.25 -1.8 407,462 + SO0394 0.25 -0.7 407,470 - SO0394 0.26 -1.2 407,542 + SO0394 0.33 -0.8 407,550 - SO0394 0.34 -2.4 407,550 - SO0394 0.34 -1.4 407,555 - SO0394 0.35 -2.5 407,742 + SO0394 0.54 -1.7 407,762 - SO0394 0.56 -1.8 407,789 + SO0394 0.59 -0.5 407,797 - SO0394 0.60 -1.4 407,852 - SO0394 0.65 -2.5 407,857 - SO0394 0.66 -1.7 407,929 + SO0394 0.73 +0.8 407,952 + SO0394 0.76 -0.5 408,078 + SO0394 0.89 -2.5 408,216 - -2.9 408,216 - -2.5 408,216 - -2.4 408,356 + -0.3 408,418 - -0.8 408,486 + prmA SO0395 0.14 -0.9 408,500 + prmA SO0395 0.15 +0.3 408,515 + prmA SO0395 0.17 -0.2 408,523 - prmA SO0395 0.18 -0.8 408,538 + prmA SO0395 0.20 -1.7 408,610 + prmA SO0395 0.28 +0.7 408,610 - prmA SO0395 0.28 -0.0 408,614 - prmA SO0395 0.28 -0.5 408,749 - prmA SO0395 0.44 -0.8 408,772 + prmA SO0395 0.46 -1.0 408,777 + prmA SO0395 0.47 -0.6 408,785 - prmA SO0395 0.48 -0.3 408,785 - prmA SO0395 0.48 +0.1 408,795 + prmA SO0395 0.49 -0.0 408,795 + prmA SO0395 0.49 +0.2 408,805 - prmA SO0395 0.50 -0.2 408,812 + prmA SO0395 0.51 +0.3 408,812 + prmA SO0395 0.51 -0.5 408,812 + prmA SO0395 0.51 +1.0 408,820 - prmA SO0395 0.52 -0.5 408,820 - prmA SO0395 0.52 -0.6 408,820 - prmA SO0395 0.52 +0.0 408,820 - prmA SO0395 0.52 +0.6 408,840 - prmA SO0395 0.54 -0.1 408,866 + prmA SO0395 0.57 -0.3 408,893 - prmA SO0395 0.60 -0.6 408,895 + prmA SO0395 0.60 -0.9 408,989 - prmA SO0395 0.71 -0.7 409,022 + prmA SO0395 0.75 -0.6 409,032 + prmA SO0395 0.76 +0.4 409,032 + prmA SO0395 0.76 -1.5 409,069 - prmA SO0395 0.80 +0.4 409,143 - prmA SO0395 0.88 -1.6
Or see this region's nucleotide sequence