Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0150 and SO0151 are separated by 271 nucleotides
SO0150: SO0150 - lipoprotein, putative (NCBI ptt file), at 158,400 to 159,176
SO0150
SO0151: SO0151 - hypothetical SAM-dependent methyltransferase (NCBI ptt file), at 159,448 to 160,215
SO0151
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 157.411 kb on - strand at 157.412 kb on - strand at 157.472 kb on + strand at 157.472 kb on + strand at 157.518 kb on - strand at 157.575 kb on + strand at 157.583 kb on - strand at 157.595 kb on - strand at 157.621 kb on + strand at 157.621 kb on + strand at 157.629 kb on - strand at 157.794 kb on + strand at 157.898 kb on + strand at 157.955 kb on + strand at 158.042 kb on + strand at 158.050 kb on - strand at 158.123 kb on - strand at 158.143 kb on - strand at 158.165 kb on + strand at 158.166 kb on + strand at 158.198 kb on + strand at 158.198 kb on + strand at 158.306 kb on + strand at 158.308 kb on + strand at 158.389 kb on - strand at 158.414 kb on - strand at 158.445 kb on + strand at 158.445 kb on + strand at 158.445 kb on + strand at 158.453 kb on - strand at 158.453 kb on - strand at 158.467 kb on + strand at 158.479 kb on + strand, within SO0150 at 158.481 kb on - strand, within SO0150 at 158.534 kb on - strand, within SO0150 at 158.606 kb on + strand, within SO0150 at 158.631 kb on - strand, within SO0150 at 158.657 kb on - strand, within SO0150 at 158.672 kb on + strand, within SO0150 at 158.684 kb on + strand, within SO0150 at 158.730 kb on - strand, within SO0150 at 158.762 kb on - strand, within SO0150 at 158.789 kb on + strand, within SO0150 at 158.797 kb on - strand, within SO0150 at 158.961 kb on + strand, within SO0150 at 159.026 kb on + strand, within SO0150 at 159.026 kb on - strand, within SO0150 at 159.125 kb on + strand at 159.163 kb on - strand at 159.382 kb on + strand at 159.405 kb on + strand at 159.408 kb on - strand at 159.428 kb on - strand at 159.499 kb on + strand at 159.531 kb on - strand, within SO0151 at 159.726 kb on + strand, within SO0151 at 159.811 kb on + strand, within SO0151 at 159.830 kb on + strand, within SO0151 at 159.863 kb on + strand, within SO0151 at 159.880 kb on + strand, within SO0151 at 159.882 kb on + strand, within SO0151 at 159.890 kb on - strand, within SO0151 at 159.890 kb on - strand, within SO0151 at 159.972 kb on + strand, within SO0151 at 160.014 kb on - strand, within SO0151 at 160.015 kb on - strand, within SO0151 at 160.015 kb on - strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.071 kb on - strand, within SO0151 at 160.071 kb on - strand, within SO0151 at 160.110 kb on - strand, within SO0151 at 160.129 kb on - strand, within SO0151 at 160.129 kb on - strand, within SO0151 at 160.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 157,411 - -0.2 157,412 - +0.7 157,472 + +0.9 157,472 + +1.5 157,518 - +1.7 157,575 + +0.9 157,583 - -0.2 157,595 - +0.5 157,621 + +0.1 157,621 + -0.8 157,629 - +0.5 157,794 + -1.4 157,898 + -0.6 157,955 + +0.1 158,042 + -0.6 158,050 - +0.7 158,123 - -0.1 158,143 - -0.6 158,165 + +0.3 158,166 + -1.3 158,198 + +0.6 158,198 + -1.1 158,306 + +0.2 158,308 + -2.2 158,389 - +1.1 158,414 - -1.0 158,445 + -0.7 158,445 + -0.5 158,445 + +0.7 158,453 - +0.3 158,453 - +0.8 158,467 + +0.5 158,479 + SO0150 0.10 -0.8 158,481 - SO0150 0.10 -2.0 158,534 - SO0150 0.17 +1.2 158,606 + SO0150 0.27 +0.8 158,631 - SO0150 0.30 +0.7 158,657 - SO0150 0.33 -0.1 158,672 + SO0150 0.35 +0.3 158,684 + SO0150 0.37 -0.4 158,730 - SO0150 0.42 -1.7 158,762 - SO0150 0.47 -0.5 158,789 + SO0150 0.50 -1.3 158,797 - SO0150 0.51 -0.5 158,961 + SO0150 0.72 -1.3 159,026 + SO0150 0.81 -0.0 159,026 - SO0150 0.81 +0.5 159,125 + -0.6 159,163 - -0.3 159,382 + +0.2 159,405 + -0.0 159,408 - -0.0 159,428 - +1.0 159,499 + -1.6 159,531 - SO0151 0.11 -1.2 159,726 + SO0151 0.36 +0.2 159,811 + SO0151 0.47 -0.2 159,830 + SO0151 0.50 +0.5 159,863 + SO0151 0.54 +1.5 159,880 + SO0151 0.56 -0.8 159,882 + SO0151 0.57 +0.1 159,890 - SO0151 0.58 -0.5 159,890 - SO0151 0.58 -0.1 159,972 + SO0151 0.68 -0.2 160,014 - SO0151 0.74 +0.8 160,015 - SO0151 0.74 +1.1 160,015 - SO0151 0.74 -0.2 160,063 + SO0151 0.80 -0.1 160,063 + SO0151 0.80 -0.1 160,063 + SO0151 0.80 -1.9 160,063 + SO0151 0.80 +1.0 160,063 + SO0151 0.80 +0.7 160,071 - SO0151 0.81 -0.9 160,071 - SO0151 0.81 +0.4 160,110 - SO0151 0.86 +0.4 160,129 - SO0151 0.89 +1.3 160,129 - SO0151 0.89 -0.8 160,173 + +0.9
Or see this region's nucleotide sequence