Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sun and fmt are separated by 2 nucleotides fmt and def-1 are separated by 15 nucleotides def-1 and SO0033 are separated by 125 nucleotides
SO0030: sun - sun protein (NCBI ptt file), at 35,131 to 36,417
sun
SO0031: fmt - methionyl-tRNA formyltransferase (NCBI ptt file), at 36,420 to 37,376
fmt
SO0032: def-1 - polypeptide deformylase (NCBI ptt file), at 37,392 to 37,898
def-1
SO0033: SO0033 - LysM domain protein (NCBI ptt file), at 38,024 to 39,160
SO0033
Position (kb) 37
38 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 36.460 kb on - strand at 37.454 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.563 kb on - strand, within def-1 at 37.576 kb on - strand, within def-1 at 37.601 kb on - strand, within def-1 at 37.637 kb on - strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.834 kb on + strand, within def-1 at 37.875 kb on + strand at 37.883 kb on - strand at 37.947 kb on + strand at 37.955 kb on - strand at 37.955 kb on - strand at 37.955 kb on - strand at 38.001 kb on - strand at 38.068 kb on - strand at 38.068 kb on - strand at 38.260 kb on + strand, within SO0033 at 38.265 kb on + strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.330 kb on + strand, within SO0033 at 38.434 kb on - strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.483 kb on + strand, within SO0033 at 38.485 kb on + strand, within SO0033 at 38.543 kb on + strand, within SO0033 at 38.577 kb on + strand, within SO0033 at 38.585 kb on - strand, within SO0033 at 38.603 kb on + strand, within SO0033 at 38.712 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.831 kb on + strand, within SO0033 at 38.836 kb on + strand, within SO0033 at 38.859 kb on + strand, within SO0033 at 38.862 kb on - strand, within SO0033 at 38.877 kb on - strand, within SO0033 at 38.882 kb on - strand, within SO0033
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 36,460 - +0.3 37,454 - def-1 SO0032 0.12 +0.0 37,488 - def-1 SO0032 0.19 +0.7 37,488 - def-1 SO0032 0.19 +2.1 37,563 - def-1 SO0032 0.34 +0.3 37,576 - def-1 SO0032 0.36 -0.7 37,601 - def-1 SO0032 0.41 +0.2 37,637 - def-1 SO0032 0.48 -1.7 37,822 + def-1 SO0032 0.85 +1.3 37,822 + def-1 SO0032 0.85 +3.5 37,822 + def-1 SO0032 0.85 +2.2 37,822 + def-1 SO0032 0.85 +2.2 37,822 + def-1 SO0032 0.85 +2.3 37,822 + def-1 SO0032 0.85 +3.1 37,822 + def-1 SO0032 0.85 +1.8 37,822 + def-1 SO0032 0.85 +1.9 37,822 + def-1 SO0032 0.85 +2.6 37,830 - def-1 SO0032 0.86 +0.6 37,830 - def-1 SO0032 0.86 +0.6 37,830 - def-1 SO0032 0.86 -0.2 37,830 - def-1 SO0032 0.86 -0.8 37,830 - def-1 SO0032 0.86 -0.1 37,830 - def-1 SO0032 0.86 +0.1 37,830 - def-1 SO0032 0.86 +0.1 37,830 - def-1 SO0032 0.86 +0.2 37,830 - def-1 SO0032 0.86 +0.5 37,830 - def-1 SO0032 0.86 +0.6 37,830 - def-1 SO0032 0.86 +0.6 37,834 + def-1 SO0032 0.87 +4.0 37,875 + +5.9 37,883 - +0.5 37,947 + +3.2 37,955 - +0.5 37,955 - -0.1 37,955 - +0.1 38,001 - -1.4 38,068 - -2.1 38,068 - +0.0 38,260 + SO0033 0.21 +1.5 38,265 + SO0033 0.21 -0.3 38,273 - SO0033 0.22 -1.1 38,273 - SO0033 0.22 +0.6 38,273 - SO0033 0.22 +0.0 38,287 + SO0033 0.23 +0.2 38,287 + SO0033 0.23 +0.5 38,287 + SO0033 0.23 -0.3 38,295 - SO0033 0.24 +0.1 38,295 - SO0033 0.24 -1.6 38,295 - SO0033 0.24 -0.0 38,330 + SO0033 0.27 +0.8 38,434 - SO0033 0.36 -1.4 38,454 + SO0033 0.38 -0.4 38,454 + SO0033 0.38 -0.2 38,476 - SO0033 0.40 +0.1 38,476 - SO0033 0.40 +1.1 38,483 + SO0033 0.40 +0.4 38,485 + SO0033 0.41 -0.5 38,543 + SO0033 0.46 +2.9 38,577 + SO0033 0.49 +0.4 38,585 - SO0033 0.49 +0.3 38,603 + SO0033 0.51 -0.3 38,712 + SO0033 0.61 -1.2 38,779 + SO0033 0.66 -1.2 38,779 + SO0033 0.66 -0.4 38,779 + SO0033 0.66 -0.9 38,787 - SO0033 0.67 +1.9 38,787 - SO0033 0.67 -0.1 38,787 - SO0033 0.67 -0.9 38,787 - SO0033 0.67 -2.5 38,831 + SO0033 0.71 -1.0 38,836 + SO0033 0.71 +0.3 38,859 + SO0033 0.73 -0.2 38,862 - SO0033 0.74 -2.4 38,877 - SO0033 0.75 +0.2 38,882 - SO0033 0.75 +0.5
Or see this region's nucleotide sequence