Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0302 and SO0304 are separated by 908 nucleotides SO0304 and SO0305 are separated by 393 nucleotides SO0305 and SO0306 are separated by 316 nucleotides
SO0302: SO0302 - hypothetical protein (NCBI ptt file), at 307,975 to 308,481
SO0302
SO0304: SO0304 - hypothetical endonuclease (NCBI ptt file), at 309,390 to 310,352
SO0304
SO0305: SO0305 - hypothetical protein (NCBI ptt file), at 310,746 to 310,859
SO0305
SO0306: SO0306 - hypothetical protein (NCBI ptt file), at 311,176 to 312,687
SO0306
Position (kb) 309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 308.400 kb on - strand, within SO0302 at 308.504 kb on + strand at 308.504 kb on + strand at 308.517 kb on - strand at 308.593 kb on - strand at 308.685 kb on + strand at 308.685 kb on - strand at 308.715 kb on + strand at 308.730 kb on - strand at 308.767 kb on - strand at 308.783 kb on - strand at 308.802 kb on + strand at 308.874 kb on - strand at 308.874 kb on - strand at 309.266 kb on - strand at 309.266 kb on - strand at 309.266 kb on - strand at 309.327 kb on + strand at 309.327 kb on + strand at 309.335 kb on - strand at 309.335 kb on - strand at 309.382 kb on + strand at 309.390 kb on - strand at 309.393 kb on + strand at 309.502 kb on - strand, within SO0304 at 309.502 kb on - strand, within SO0304 at 309.642 kb on + strand, within SO0304 at 309.777 kb on + strand, within SO0304 at 309.848 kb on + strand, within SO0304 at 309.848 kb on + strand, within SO0304 at 309.850 kb on - strand, within SO0304 at 309.851 kb on - strand, within SO0304 at 309.922 kb on + strand, within SO0304 at 309.930 kb on - strand, within SO0304 at 309.930 kb on - strand, within SO0304 at 309.988 kb on + strand, within SO0304 at 309.989 kb on + strand, within SO0304 at 309.996 kb on - strand, within SO0304 at 309.996 kb on - strand, within SO0304 at 309.996 kb on - strand, within SO0304 at 310.079 kb on - strand, within SO0304 at 310.087 kb on + strand, within SO0304 at 310.087 kb on + strand, within SO0304 at 310.098 kb on + strand, within SO0304 at 310.134 kb on + strand, within SO0304 at 310.162 kb on + strand, within SO0304 at 310.169 kb on + strand, within SO0304 at 310.169 kb on + strand, within SO0304 at 310.281 kb on - strand at 310.367 kb on - strand at 310.388 kb on - strand at 310.506 kb on + strand at 310.527 kb on + strand at 310.544 kb on + strand at 310.552 kb on - strand at 310.552 kb on - strand at 310.552 kb on - strand at 310.552 kb on - strand at 310.552 kb on - strand at 310.564 kb on + strand at 310.597 kb on - strand at 310.617 kb on + strand at 310.649 kb on + strand at 310.657 kb on - strand at 310.707 kb on + strand at 310.707 kb on + strand at 310.707 kb on + strand at 310.707 kb on + strand at 310.707 kb on + strand at 310.707 kb on + strand at 310.715 kb on - strand at 310.770 kb on - strand, within SO0305 at 310.820 kb on - strand, within SO0305 at 310.917 kb on + strand at 310.930 kb on + strand at 310.962 kb on + strand at 311.086 kb on - strand at 311.153 kb on - strand at 311.234 kb on + strand at 311.242 kb on - strand at 311.242 kb on - strand at 311.268 kb on + strand at 311.269 kb on + strand at 311.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 308,400 - SO0302 0.84 -0.1 308,504 + -3.2 308,504 + -1.2 308,517 - -0.5 308,593 - +0.4 308,685 + +0.3 308,685 - -0.5 308,715 + +0.1 308,730 - +0.2 308,767 - -0.8 308,783 - +1.4 308,802 + -1.1 308,874 - -0.5 308,874 - +0.7 309,266 - -1.2 309,266 - -0.9 309,266 - +0.8 309,327 + +2.0 309,327 + +0.1 309,335 - +0.1 309,335 - -0.6 309,382 + -0.2 309,390 - -0.7 309,393 + -0.9 309,502 - SO0304 0.12 -0.0 309,502 - SO0304 0.12 -0.8 309,642 + SO0304 0.26 +0.3 309,777 + SO0304 0.40 +0.4 309,848 + SO0304 0.48 +1.1 309,848 + SO0304 0.48 +2.7 309,850 - SO0304 0.48 +0.2 309,851 - SO0304 0.48 +0.6 309,922 + SO0304 0.55 +0.5 309,930 - SO0304 0.56 +0.7 309,930 - SO0304 0.56 +1.5 309,988 + SO0304 0.62 +0.1 309,989 + SO0304 0.62 -0.0 309,996 - SO0304 0.63 +2.3 309,996 - SO0304 0.63 -0.1 309,996 - SO0304 0.63 -0.4 310,079 - SO0304 0.72 -0.1 310,087 + SO0304 0.72 +0.2 310,087 + SO0304 0.72 +0.6 310,098 + SO0304 0.74 -1.2 310,134 + SO0304 0.77 +0.4 310,162 + SO0304 0.80 -0.7 310,169 + SO0304 0.81 -1.0 310,169 + SO0304 0.81 +2.0 310,281 - -0.3 310,367 - -1.9 310,388 - -0.3 310,506 + +0.1 310,527 + +0.8 310,544 + -0.3 310,552 - +0.7 310,552 - +0.0 310,552 - -0.5 310,552 - +1.1 310,552 - +2.1 310,564 + +0.1 310,597 - +0.7 310,617 + +1.4 310,649 + +2.7 310,657 - +0.6 310,707 + +0.2 310,707 + -0.7 310,707 + +0.4 310,707 + -0.8 310,707 + -0.4 310,707 + +0.0 310,715 - -2.1 310,770 - SO0305 0.21 +0.3 310,820 - SO0305 0.65 +0.2 310,917 + +1.5 310,930 + -0.1 310,962 + +0.3 311,086 - -0.4 311,153 - -0.6 311,234 + +0.2 311,242 - +0.2 311,242 - +0.7 311,268 + +0.5 311,269 + -0.7 311,296 - -0.1
Or see this region's nucleotide sequence