Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0055 and SO0056 are separated by 387 nucleotides SO0056 and SO0057 are separated by 111 nucleotides
SO0055: SO0055 - conserved domain protein (NCBI ptt file), at 61,362 to 63,041
SO0055
SO0056: SO0056 - transporter, putative (NCBI ptt file), at 63,429 to 64,187
SO0056
SO0057: SO0057 - potassium uptake protein, Trk family (NCBI ptt file), at 64,299 to 65,660
SO0057
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 62.529 kb on + strand, within SO0055 at 62.581 kb on + strand, within SO0055 at 62.581 kb on + strand, within SO0055 at 62.589 kb on - strand, within SO0055 at 62.589 kb on - strand, within SO0055 at 62.589 kb on - strand, within SO0055 at 62.589 kb on - strand, within SO0055 at 62.591 kb on + strand, within SO0055 at 62.604 kb on + strand, within SO0055 at 62.690 kb on + strand, within SO0055 at 62.695 kb on + strand, within SO0055 at 62.742 kb on + strand, within SO0055 at 62.750 kb on - strand, within SO0055 at 62.750 kb on - strand, within SO0055 at 62.750 kb on - strand, within SO0055 at 62.769 kb on - strand, within SO0055 at 62.775 kb on + strand, within SO0055 at 62.781 kb on + strand, within SO0055 at 62.789 kb on - strand, within SO0055 at 62.789 kb on - strand, within SO0055 at 62.866 kb on + strand, within SO0055 at 62.866 kb on + strand, within SO0055 at 62.874 kb on - strand at 62.877 kb on + strand at 62.882 kb on + strand at 62.951 kb on + strand at 62.951 kb on + strand at 62.951 kb on + strand at 62.951 kb on + strand at 62.951 kb on + strand at 62.959 kb on - strand at 62.959 kb on - strand at 62.959 kb on - strand at 62.959 kb on - strand at 63.003 kb on - strand at 63.033 kb on - strand at 63.150 kb on + strand at 63.151 kb on - strand at 63.183 kb on - strand at 63.202 kb on - strand at 63.210 kb on - strand at 63.217 kb on - strand at 63.236 kb on + strand at 63.255 kb on - strand at 63.266 kb on + strand at 63.274 kb on - strand at 63.274 kb on - strand at 63.301 kb on + strand at 63.344 kb on - strand at 63.349 kb on - strand at 63.357 kb on + strand at 63.406 kb on - strand at 63.498 kb on + strand at 63.541 kb on - strand, within SO0056 at 63.587 kb on + strand, within SO0056 at 63.587 kb on + strand, within SO0056 at 63.587 kb on + strand, within SO0056 at 63.595 kb on - strand, within SO0056 at 63.678 kb on + strand, within SO0056 at 63.678 kb on + strand, within SO0056 at 63.678 kb on + strand, within SO0056 at 63.686 kb on - strand, within SO0056 at 63.843 kb on - strand, within SO0056 at 63.845 kb on + strand, within SO0056 at 63.845 kb on + strand, within SO0056 at 63.845 kb on + strand, within SO0056 at 63.848 kb on - strand, within SO0056 at 63.853 kb on - strand, within SO0056 at 63.853 kb on - strand, within SO0056 at 63.853 kb on - strand, within SO0056 at 63.853 kb on - strand, within SO0056 at 63.854 kb on - strand, within SO0056 at 63.859 kb on - strand, within SO0056 at 63.912 kb on + strand, within SO0056 at 63.920 kb on - strand, within SO0056 at 64.031 kb on + strand, within SO0056 at 64.071 kb on + strand, within SO0056 at 64.077 kb on - strand, within SO0056 at 64.079 kb on - strand, within SO0056 at 64.079 kb on - strand, within SO0056 at 64.171 kb on + strand at 64.179 kb on - strand at 64.189 kb on - strand at 64.216 kb on - strand at 64.216 kb on - strand at 64.226 kb on - strand at 64.240 kb on + strand at 64.264 kb on + strand at 64.320 kb on - strand at 64.343 kb on + strand at 64.343 kb on + strand at 64.416 kb on + strand at 64.416 kb on + strand at 64.421 kb on + strand at 64.463 kb on - strand, within SO0057 at 64.468 kb on + strand, within SO0057 at 64.561 kb on + strand, within SO0057 at 64.577 kb on + strand, within SO0057 at 64.585 kb on + strand, within SO0057 at 64.653 kb on + strand, within SO0057 at 64.660 kb on - strand, within SO0057 at 64.676 kb on + strand, within SO0057 at 64.684 kb on - strand, within SO0057 at 64.684 kb on - strand, within SO0057 at 64.684 kb on - strand, within SO0057 at 64.752 kb on - strand, within SO0057 at 64.754 kb on + strand, within SO0057 at 64.762 kb on - strand, within SO0057 at 64.762 kb on - strand, within SO0057 at 64.811 kb on + strand, within SO0057 at 64.811 kb on + strand, within SO0057 at 64.819 kb on + strand, within SO0057 at 64.819 kb on - strand, within SO0057 at 64.869 kb on - strand, within SO0057 at 64.910 kb on + strand, within SO0057 at 64.918 kb on + strand, within SO0057 at 64.923 kb on + strand, within SO0057 at 64.928 kb on + strand, within SO0057 at 64.928 kb on + strand, within SO0057 at 64.936 kb on - strand, within SO0057 at 64.936 kb on - strand, within SO0057 at 65.002 kb on - strand, within SO0057 at 65.020 kb on - strand, within SO0057 at 65.099 kb on + strand, within SO0057 at 65.165 kb on + strand, within SO0057
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 62,529 + SO0055 0.69 +0.2 62,581 + SO0055 0.73 -0.8 62,581 + SO0055 0.73 -0.5 62,589 - SO0055 0.73 +0.1 62,589 - SO0055 0.73 -2.6 62,589 - SO0055 0.73 -1.8 62,589 - SO0055 0.73 +0.7 62,591 + SO0055 0.73 -1.8 62,604 + SO0055 0.74 +0.7 62,690 + SO0055 0.79 +2.1 62,695 + SO0055 0.79 +0.9 62,742 + SO0055 0.82 +0.8 62,750 - SO0055 0.83 -0.1 62,750 - SO0055 0.83 -0.2 62,750 - SO0055 0.83 +0.2 62,769 - SO0055 0.84 -0.4 62,775 + SO0055 0.84 +0.2 62,781 + SO0055 0.84 +1.4 62,789 - SO0055 0.85 -1.6 62,789 - SO0055 0.85 +0.1 62,866 + SO0055 0.90 +1.2 62,866 + SO0055 0.90 +0.2 62,874 - +1.4 62,877 + +0.7 62,882 + +0.4 62,951 + +0.1 62,951 + -1.4 62,951 + +0.1 62,951 + -0.4 62,951 + +0.1 62,959 - +0.8 62,959 - +0.8 62,959 - -0.2 62,959 - +1.0 63,003 - -0.4 63,033 - -0.9 63,150 + -0.7 63,151 - -0.5 63,183 - -0.8 63,202 - -0.4 63,210 - +1.1 63,217 - -1.2 63,236 + -0.4 63,255 - -2.0 63,266 + +0.2 63,274 - +0.2 63,274 - +0.1 63,301 + +1.4 63,344 - +0.3 63,349 - +0.0 63,357 + -0.8 63,406 - -0.3 63,498 + +1.3 63,541 - SO0056 0.15 +0.1 63,587 + SO0056 0.21 -1.3 63,587 + SO0056 0.21 +0.3 63,587 + SO0056 0.21 -0.7 63,595 - SO0056 0.22 +0.3 63,678 + SO0056 0.33 +0.6 63,678 + SO0056 0.33 -1.0 63,678 + SO0056 0.33 +0.7 63,686 - SO0056 0.34 -0.0 63,843 - SO0056 0.55 -0.6 63,845 + SO0056 0.55 +0.1 63,845 + SO0056 0.55 +0.2 63,845 + SO0056 0.55 +0.8 63,848 - SO0056 0.55 +0.9 63,853 - SO0056 0.56 -1.1 63,853 - SO0056 0.56 +1.4 63,853 - SO0056 0.56 +0.4 63,853 - SO0056 0.56 +1.6 63,854 - SO0056 0.56 +4.1 63,859 - SO0056 0.57 +1.4 63,912 + SO0056 0.64 +1.2 63,920 - SO0056 0.65 +0.1 64,031 + SO0056 0.79 +0.3 64,071 + SO0056 0.85 -0.5 64,077 - SO0056 0.85 +1.4 64,079 - SO0056 0.86 -0.4 64,079 - SO0056 0.86 +0.2 64,171 + +0.0 64,179 - +0.4 64,189 - -0.4 64,216 - +1.2 64,216 - -0.6 64,226 - +0.4 64,240 + +1.9 64,264 + -0.9 64,320 - +0.0 64,343 + +0.7 64,343 + -1.1 64,416 + +0.5 64,416 + +0.1 64,421 + +0.2 64,463 - SO0057 0.12 -0.7 64,468 + SO0057 0.12 -1.6 64,561 + SO0057 0.19 +1.3 64,577 + SO0057 0.20 +0.1 64,585 + SO0057 0.21 +0.4 64,653 + SO0057 0.26 -0.0 64,660 - SO0057 0.27 -0.5 64,676 + SO0057 0.28 +0.9 64,684 - SO0057 0.28 +0.1 64,684 - SO0057 0.28 +0.4 64,684 - SO0057 0.28 -0.9 64,752 - SO0057 0.33 -0.6 64,754 + SO0057 0.33 -0.1 64,762 - SO0057 0.34 -1.2 64,762 - SO0057 0.34 -2.9 64,811 + SO0057 0.38 -0.4 64,811 + SO0057 0.38 -1.0 64,819 + SO0057 0.38 -1.0 64,819 - SO0057 0.38 +0.2 64,869 - SO0057 0.42 +4.4 64,910 + SO0057 0.45 -0.2 64,918 + SO0057 0.45 -0.8 64,923 + SO0057 0.46 -0.0 64,928 + SO0057 0.46 +0.9 64,928 + SO0057 0.46 +0.5 64,936 - SO0057 0.47 +1.8 64,936 - SO0057 0.47 -0.3 65,002 - SO0057 0.52 +0.8 65,020 - SO0057 0.53 +0.4 65,099 + SO0057 0.59 -0.4 65,165 + SO0057 0.64 -0.3
Or see this region's nucleotide sequence