Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0033 and SO0034 are separated by 83 nucleotides SO0034 and smg are separated by 2 nucleotides smg and SO0036 are separated by 112 nucleotides
SO0033: SO0033 - LysM domain protein (NCBI ptt file), at 38,024 to 39,160
SO0033
SO0034: SO0034 - DNA processing protein DprA, putative (NCBI ptt file), at 39,244 to 40,260
SO0034
SO0035: smg - smg protein (NCBI ptt file), at 40,263 to 40,739
smg
SO0036: SO0036 - topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file), at 40,852 to 41,418
SO0036
Position (kb)
39
40
41 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 38.260 kb on + strand, within SO0033 at 38.265 kb on + strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.330 kb on + strand, within SO0033 at 38.434 kb on - strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.483 kb on + strand, within SO0033 at 38.485 kb on + strand, within SO0033 at 38.543 kb on + strand, within SO0033 at 38.577 kb on + strand, within SO0033 at 38.585 kb on - strand, within SO0033 at 38.603 kb on + strand, within SO0033 at 38.712 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.831 kb on + strand, within SO0033 at 38.836 kb on + strand, within SO0033 at 38.859 kb on + strand, within SO0033 at 38.862 kb on - strand, within SO0033 at 38.877 kb on - strand, within SO0033 at 38.882 kb on - strand, within SO0033 at 38.977 kb on - strand, within SO0033 at 38.992 kb on + strand, within SO0033 at 39.153 kb on - strand at 39.207 kb on + strand at 39.257 kb on + strand at 39.265 kb on - strand at 39.362 kb on + strand, within SO0034 at 39.408 kb on + strand, within SO0034 at 39.408 kb on + strand, within SO0034 at 39.416 kb on - strand, within SO0034 at 39.416 kb on - strand, within SO0034 at 39.416 kb on - strand, within SO0034 at 39.421 kb on - strand, within SO0034 at 39.470 kb on + strand, within SO0034 at 39.615 kb on - strand, within SO0034 at 39.616 kb on - strand, within SO0034 at 39.625 kb on + strand, within SO0034 at 39.625 kb on - strand, within SO0034 at 39.625 kb on - strand, within SO0034 at 39.633 kb on - strand, within SO0034 at 39.633 kb on - strand, within SO0034 at 39.633 kb on - strand, within SO0034 at 39.649 kb on + strand, within SO0034 at 39.661 kb on + strand, within SO0034 at 39.737 kb on + strand, within SO0034 at 39.763 kb on + strand, within SO0034 at 39.880 kb on - strand, within SO0034 at 40.061 kb on + strand, within SO0034 at 40.227 kb on + strand at 40.234 kb on + strand at 40.234 kb on + strand at 40.239 kb on + strand at 40.239 kb on + strand at 40.246 kb on + strand at 40.247 kb on - strand at 40.252 kb on - strand at 40.335 kb on + strand, within smg at 40.344 kb on - strand, within smg at 40.350 kb on - strand, within smg at 40.362 kb on + strand, within smg at 40.430 kb on + strand, within smg at 40.430 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.436 kb on + strand, within smg at 40.436 kb on + strand, within smg at 40.436 kb on + strand, within smg at 40.438 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.445 kb on + strand, within smg at 40.511 kb on - strand, within smg at 40.564 kb on + strand, within smg at 40.660 kb on - strand, within smg at 40.727 kb on + strand at 40.735 kb on - strand at 40.750 kb on - strand at 40.878 kb on + strand at 40.978 kb on - strand, within SO0036 at 41.015 kb on - strand, within SO0036 at 41.023 kb on - strand, within SO0036 at 41.025 kb on + strand, within SO0036 at 41.057 kb on + strand, within SO0036 at 41.149 kb on - strand, within SO0036 at 41.180 kb on + strand, within SO0036 at 41.188 kb on - strand, within SO0036 at 41.216 kb on + strand, within SO0036 at 41.216 kb on + strand, within SO0036
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 38,260 + SO0033 0.21 +1.2 38,265 + SO0033 0.21 +0.2 38,273 - SO0033 0.22 +1.6 38,273 - SO0033 0.22 +0.2 38,273 - SO0033 0.22 +1.6 38,287 + SO0033 0.23 -1.8 38,287 + SO0033 0.23 -0.1 38,287 + SO0033 0.23 +0.3 38,295 - SO0033 0.24 -0.9 38,295 - SO0033 0.24 -0.2 38,295 - SO0033 0.24 -0.3 38,330 + SO0033 0.27 -2.2 38,434 - SO0033 0.36 -2.1 38,454 + SO0033 0.38 -0.4 38,454 + SO0033 0.38 +0.0 38,476 - SO0033 0.40 -0.1 38,476 - SO0033 0.40 +0.0 38,483 + SO0033 0.40 -2.7 38,485 + SO0033 0.41 +0.0 38,543 + SO0033 0.46 -0.1 38,577 + SO0033 0.49 -1.3 38,585 - SO0033 0.49 -0.1 38,603 + SO0033 0.51 +2.5 38,712 + SO0033 0.61 +2.6 38,779 + SO0033 0.66 -0.3 38,779 + SO0033 0.66 +0.9 38,779 + SO0033 0.66 -0.0 38,787 - SO0033 0.67 +0.4 38,787 - SO0033 0.67 +0.5 38,787 - SO0033 0.67 -0.7 38,787 - SO0033 0.67 -1.3 38,831 + SO0033 0.71 +1.8 38,836 + SO0033 0.71 +0.1 38,859 + SO0033 0.73 -0.5 38,862 - SO0033 0.74 -0.6 38,877 - SO0033 0.75 -0.9 38,882 - SO0033 0.75 -0.5 38,977 - SO0033 0.84 +0.4 38,992 + SO0033 0.85 -0.4 39,153 - +0.2 39,207 + -1.1 39,257 + +1.8 39,265 - +0.5 39,362 + SO0034 0.12 -0.2 39,408 + SO0034 0.16 -0.6 39,408 + SO0034 0.16 -1.2 39,416 - SO0034 0.17 +2.5 39,416 - SO0034 0.17 +1.0 39,416 - SO0034 0.17 +0.2 39,421 - SO0034 0.17 -0.7 39,470 + SO0034 0.22 -0.4 39,615 - SO0034 0.36 +1.1 39,616 - SO0034 0.37 -0.6 39,625 + SO0034 0.37 +0.3 39,625 - SO0034 0.37 +2.0 39,625 - SO0034 0.37 -0.4 39,633 - SO0034 0.38 -0.5 39,633 - SO0034 0.38 +1.5 39,633 - SO0034 0.38 +3.0 39,649 + SO0034 0.40 +0.5 39,661 + SO0034 0.41 -0.8 39,737 + SO0034 0.48 +1.5 39,763 + SO0034 0.51 -1.3 39,880 - SO0034 0.63 +0.8 40,061 + SO0034 0.80 +0.4 40,227 + -0.2 40,234 + -0.8 40,234 + -1.5 40,239 + +1.4 40,239 + -2.1 40,246 + +0.6 40,247 - -0.1 40,252 - -1.4 40,335 + smg SO0035 0.15 -0.9 40,344 - smg SO0035 0.17 -1.1 40,350 - smg SO0035 0.18 +0.8 40,362 + smg SO0035 0.21 -1.1 40,430 + smg SO0035 0.35 +0.7 40,430 + smg SO0035 0.35 -0.6 40,435 + smg SO0035 0.36 +0.4 40,435 + smg SO0035 0.36 -1.5 40,435 + smg SO0035 0.36 -0.8 40,435 + smg SO0035 0.36 -0.5 40,435 + smg SO0035 0.36 -1.5 40,436 + smg SO0035 0.36 -1.2 40,436 + smg SO0035 0.36 +1.1 40,436 + smg SO0035 0.36 +0.5 40,438 - smg SO0035 0.37 -0.9 40,443 - smg SO0035 0.38 +0.9 40,443 - smg SO0035 0.38 +1.7 40,443 - smg SO0035 0.38 -2.1 40,443 - smg SO0035 0.38 -3.2 40,443 - smg SO0035 0.38 -0.1 40,443 - smg SO0035 0.38 -0.6 40,443 - smg SO0035 0.38 +0.3 40,443 - smg SO0035 0.38 -1.3 40,443 - smg SO0035 0.38 +0.1 40,445 + smg SO0035 0.38 -0.6 40,511 - smg SO0035 0.52 -1.2 40,564 + smg SO0035 0.63 -1.3 40,660 - smg SO0035 0.83 -1.3 40,727 + -1.1 40,735 - -0.5 40,750 - -0.4 40,878 + -0.5 40,978 - SO0036 0.22 -0.8 41,015 - SO0036 0.29 -0.4 41,023 - SO0036 0.30 -0.1 41,025 + SO0036 0.31 -1.1 41,057 + SO0036 0.36 -1.5 41,149 - SO0036 0.52 +0.2 41,180 + SO0036 0.58 -1.6 41,188 - SO0036 0.59 +0.5 41,216 + SO0036 0.64 +0.0 41,216 + SO0036 0.64 -0.4
Or see this region's nucleotide sequence