Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0843 and SO0844 are separated by 94 nucleotides SO0844 and napB are separated by 175 nucleotides napB and napH overlap by 4 nucleotides napH and napG are separated by 41 nucleotides napG and napA are separated by 51 nucleotides
SO0843: SO0843 - transcriptional regulator, LysR family (NCBI ptt file), at 865,510 to 866,391
SO0843
SO0844: SO0844 - hypothetical protein (NCBI ptt file), at 866,486 to 866,638
SO0844
SO0845: napB - cytochrome c-type protein NapB (NCBI ptt file), at 866,814 to 867,245
napB
SO0846: napH - iron-sulfur cluster-binding protein napH (NCBI ptt file), at 867,242 to 868,201
napH
SO0847: napG - iron-sulfur cluster-binding protein NapG (NCBI ptt file), at 868,243 to 868,977
napG
SO0848: napA - periplasmic nitrate reductase (NCBI ptt file), at 869,029 to 871,509
napA
Position (kb) 867
868
869 Strain fitness (log2 ratio) -2
-1
0
1
2 at 866.386 kb on + strand at 866.469 kb on + strand at 866.578 kb on - strand, within SO0844 at 866.683 kb on - strand at 866.755 kb on + strand at 866.774 kb on - strand at 866.786 kb on - strand at 866.869 kb on + strand, within napB at 866.950 kb on + strand, within napB at 866.958 kb on - strand, within napB at 866.958 kb on - strand, within napB at 866.958 kb on - strand at 866.965 kb on + strand, within napB at 866.965 kb on + strand, within napB at 866.973 kb on - strand, within napB at 867.066 kb on + strand, within napB at 867.132 kb on + strand, within napB at 867.163 kb on + strand, within napB at 867.188 kb on + strand, within napB at 867.297 kb on + strand at 867.390 kb on - strand, within napH at 867.391 kb on + strand, within napH at 867.448 kb on - strand, within napH at 867.461 kb on + strand, within napH at 867.461 kb on + strand, within napH at 867.461 kb on + strand, within napH at 867.515 kb on + strand, within napH at 867.585 kb on + strand, within napH at 867.623 kb on - strand, within napH at 867.687 kb on - strand, within napH at 867.698 kb on + strand, within napH at 867.700 kb on + strand, within napH at 867.752 kb on - strand, within napH at 867.853 kb on + strand, within napH at 867.861 kb on - strand, within napH at 867.951 kb on - strand, within napH at 867.951 kb on - strand, within napH at 867.980 kb on + strand, within napH at 868.065 kb on - strand, within napH at 868.099 kb on - strand, within napH at 868.137 kb on - strand at 868.220 kb on - strand at 868.235 kb on - strand at 868.289 kb on + strand at 868.297 kb on - strand at 868.303 kb on + strand at 868.303 kb on + strand at 868.309 kb on - strand at 868.445 kb on + strand, within napG at 868.467 kb on - strand, within napG at 868.475 kb on - strand, within napG at 868.522 kb on + strand, within napG at 868.594 kb on - strand, within napG at 868.610 kb on - strand, within napG at 868.640 kb on - strand, within napG at 868.728 kb on + strand, within napG at 868.728 kb on + strand, within napG at 868.760 kb on - strand, within napG at 868.800 kb on + strand, within napG at 868.800 kb on + strand, within napG at 868.800 kb on + strand, within napG at 868.800 kb on + strand, within napG at 868.800 kb on + strand, within napG at 868.800 kb on + strand, within napG at 868.800 kb on + strand, within napG at 868.800 kb on + strand, within napG at 868.800 kb on + strand, within napG at 868.800 kb on + strand, within napG at 868.808 kb on - strand, within napG at 868.808 kb on - strand, within napG at 868.808 kb on - strand, within napG at 868.808 kb on - strand, within napG at 868.808 kb on - strand, within napG at 868.825 kb on + strand, within napG at 868.837 kb on + strand, within napG at 868.845 kb on - strand, within napG at 868.976 kb on + strand at 868.977 kb on + strand at 868.985 kb on - strand at 869.028 kb on - strand at 869.028 kb on - strand at 869.034 kb on - strand at 869.035 kb on - strand at 869.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 866,386 + +1.7 866,469 + +0.3 866,578 - SO0844 0.60 +0.8 866,683 - -0.7 866,755 + -1.5 866,774 - -0.0 866,786 - +2.1 866,869 + napB SO0845 0.13 +0.5 866,950 + napB SO0845 0.31 -1.8 866,958 - napB SO0845 0.33 +0.0 866,958 - napB SO0845 0.33 +0.9 866,958 - +1.4 866,965 + napB SO0845 0.35 +0.7 866,965 + napB SO0845 0.35 +0.4 866,973 - napB SO0845 0.37 -0.3 867,066 + napB SO0845 0.58 -0.1 867,132 + napB SO0845 0.74 +0.5 867,163 + napB SO0845 0.81 +0.4 867,188 + napB SO0845 0.87 +0.3 867,297 + +0.8 867,390 - napH SO0846 0.15 -0.0 867,391 + napH SO0846 0.16 -0.0 867,448 - napH SO0846 0.21 +0.3 867,461 + napH SO0846 0.23 -0.2 867,461 + napH SO0846 0.23 -1.2 867,461 + napH SO0846 0.23 -0.7 867,515 + napH SO0846 0.28 -1.2 867,585 + napH SO0846 0.36 -1.8 867,623 - napH SO0846 0.40 -1.3 867,687 - napH SO0846 0.46 -1.7 867,698 + napH SO0846 0.47 -0.5 867,700 + napH SO0846 0.48 +0.1 867,752 - napH SO0846 0.53 +0.3 867,853 + napH SO0846 0.64 +0.1 867,861 - napH SO0846 0.64 -0.9 867,951 - napH SO0846 0.74 -0.9 867,951 - napH SO0846 0.74 -0.5 867,980 + napH SO0846 0.77 -0.1 868,065 - napH SO0846 0.86 -0.4 868,099 - napH SO0846 0.89 -0.4 868,137 - -1.4 868,220 - +0.1 868,235 - -2.0 868,289 + -1.4 868,297 - -0.0 868,303 + -0.4 868,303 + +1.0 868,309 - -0.1 868,445 + napG SO0847 0.27 -1.1 868,467 - napG SO0847 0.30 +1.1 868,475 - napG SO0847 0.32 -0.5 868,522 + napG SO0847 0.38 +0.3 868,594 - napG SO0847 0.48 +0.3 868,610 - napG SO0847 0.50 +0.6 868,640 - napG SO0847 0.54 +0.3 868,728 + napG SO0847 0.66 -0.1 868,728 + napG SO0847 0.66 -0.7 868,760 - napG SO0847 0.70 -0.1 868,800 + napG SO0847 0.76 +0.1 868,800 + napG SO0847 0.76 +0.1 868,800 + napG SO0847 0.76 -0.3 868,800 + napG SO0847 0.76 +0.7 868,800 + napG SO0847 0.76 -0.4 868,800 + napG SO0847 0.76 -0.9 868,800 + napG SO0847 0.76 +1.1 868,800 + napG SO0847 0.76 +0.1 868,800 + napG SO0847 0.76 +0.8 868,800 + napG SO0847 0.76 -0.0 868,808 - napG SO0847 0.77 +0.8 868,808 - napG SO0847 0.77 +0.7 868,808 - napG SO0847 0.77 +0.4 868,808 - napG SO0847 0.77 -0.5 868,808 - napG SO0847 0.77 +0.1 868,825 + napG SO0847 0.79 +0.4 868,837 + napG SO0847 0.81 +0.7 868,845 - napG SO0847 0.82 -0.6 868,976 + -0.4 868,977 + +0.8 868,985 - -0.3 869,028 - +0.3 869,028 - +1.0 869,034 - +0.1 869,035 - -0.4 869,173 + +0.7
Or see this region's nucleotide sequence