Strain Fitness in Shewanella oneidensis MR-1 around SO0570

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0569 and SO0570 are separated by 18 nucleotidesSO0570 and SO0572 are separated by 573 nucleotides SO0569: SO0569 - sensory box/GGDEF family protein (NCBI ptt file), at 589,618 to 590,592 SO0569 SO0570: SO0570 - response regulator (NCBI ptt file), at 590,611 to 591,606 SO0570 SO0572: SO0572 - enoyl-CoA hydratase/isomerase family protein (NCBI ptt file), at 592,180 to 592,986 SO0572 Position (kb) 590 591 592Strain fitness (log2 ratio) -2 -1 0 1 2at 589.620 kb on + strandat 589.642 kb on + strandat 589.650 kb on - strandat 589.650 kb on - strandat 589.650 kb on - strandat 589.681 kb on + strandat 589.749 kb on + strand, within SO0569at 589.749 kb on + strand, within SO0569at 589.749 kb on + strand, within SO0569at 589.749 kb on + strand, within SO0569at 589.757 kb on - strand, within SO0569at 589.757 kb on - strand, within SO0569at 589.757 kb on - strand, within SO0569at 589.782 kb on - strand, within SO0569at 589.782 kb on - strand, within SO0569at 589.834 kb on + strand, within SO0569at 589.861 kb on + strand, within SO0569at 589.869 kb on - strand, within SO0569at 589.870 kb on - strand, within SO0569at 589.879 kb on + strand, within SO0569at 589.896 kb on + strand, within SO0569at 589.933 kb on + strand, within SO0569at 589.965 kb on - strand, within SO0569at 590.161 kb on - strand, within SO0569at 590.293 kb on - strand, within SO0569at 590.403 kb on + strand, within SO0569at 590.416 kb on + strand, within SO0569at 590.424 kb on - strand, within SO0569at 590.477 kb on - strand, within SO0569at 590.514 kb on - strandat 590.526 kb on + strandat 590.534 kb on - strandat 590.534 kb on - strandat 590.534 kb on - strandat 590.542 kb on - strandat 590.604 kb on - strandat 590.777 kb on + strand, within SO0570at 590.785 kb on - strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.796 kb on + strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.809 kb on - strand, within SO0570at 590.832 kb on + strand, within SO0570at 590.860 kb on + strand, within SO0570at 590.878 kb on + strand, within SO0570at 591.001 kb on + strand, within SO0570at 591.220 kb on + strand, within SO0570at 591.234 kb on + strand, within SO0570at 591.249 kb on - strand, within SO0570at 591.323 kb on + strand, within SO0570at 591.323 kb on + strand, within SO0570at 591.341 kb on + strand, within SO0570at 591.414 kb on + strand, within SO0570at 591.414 kb on + strand, within SO0570at 591.471 kb on - strand, within SO0570at 591.471 kb on - strand, within SO0570at 591.471 kb on - strand, within SO0570at 591.471 kb on - strand, within SO0570at 591.586 kb on + strandat 591.586 kb on + strandat 591.591 kb on + strandat 591.594 kb on - strandat 591.599 kb on - strandat 591.620 kb on - strandat 591.620 kb on - strandat 591.623 kb on + strandat 591.655 kb on - strandat 591.718 kb on - strandat 591.774 kb on - strandat 591.845 kb on + strandat 591.845 kb on + strandat 591.853 kb on - strandat 591.891 kb on + strandat 591.899 kb on + strandat 591.899 kb on - strandat 591.901 kb on + strandat 591.902 kb on + strandat 591.908 kb on - strandat 591.909 kb on - strandat 591.909 kb on - strandat 591.934 kb on - strandat 591.953 kb on - strandat 592.052 kb on + strandat 592.060 kb on - strandat 592.176 kb on + strandat 592.176 kb on + strandat 592.191 kb on - strandat 592.203 kb on - strandat 592.466 kb on + strand, within SO0572at 592.481 kb on + strand, within SO0572at 592.506 kb on + strand, within SO0572at 592.513 kb on + strand, within SO0572at 592.577 kb on + strand, within SO0572

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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589,620 + +0.3
589,642 + +1.1
589,650 - +0.0
589,650 - +0.9
589,650 - +0.7
589,681 + +1.7
589,749 + SO0569 0.13 +0.6
589,749 + SO0569 0.13 -1.5
589,749 + SO0569 0.13 +2.4
589,749 + SO0569 0.13 +0.6
589,757 - SO0569 0.14 +0.9
589,757 - SO0569 0.14 +0.8
589,757 - SO0569 0.14 +0.2
589,782 - SO0569 0.17 +0.3
589,782 - SO0569 0.17 +1.6
589,834 + SO0569 0.22 +1.0
589,861 + SO0569 0.25 +0.1
589,869 - SO0569 0.26 +0.5
589,870 - SO0569 0.26 +2.0
589,879 + SO0569 0.27 +1.2
589,896 + SO0569 0.29 -0.2
589,933 + SO0569 0.32 +0.6
589,965 - SO0569 0.36 +1.1
590,161 - SO0569 0.56 +0.6
590,293 - SO0569 0.69 -0.0
590,403 + SO0569 0.81 -0.1
590,416 + SO0569 0.82 +1.5
590,424 - SO0569 0.83 +0.1
590,477 - SO0569 0.88 -0.4
590,514 - -1.5
590,526 + -0.3
590,534 - +0.8
590,534 - +0.7
590,534 - +1.0
590,542 - -0.4
590,604 - -0.2
590,777 + SO0570 0.17 -1.1
590,785 - SO0570 0.17 +0.6
590,788 + SO0570 0.18 +0.9
590,788 + SO0570 0.18 +0.1
590,788 + SO0570 0.18 +0.7
590,788 + SO0570 0.18 -0.2
590,788 + SO0570 0.18 +0.6
590,788 + SO0570 0.18 +1.2
590,788 + SO0570 0.18 +1.2
590,796 + SO0570 0.19 +0.8
590,796 - SO0570 0.19 +1.2
590,796 - SO0570 0.19 +0.0
590,796 - SO0570 0.19 +0.1
590,796 - SO0570 0.19 +1.6
590,796 - SO0570 0.19 +0.2
590,796 - SO0570 0.19 +0.7
590,796 - SO0570 0.19 +0.3
590,796 - SO0570 0.19 +0.3
590,796 - SO0570 0.19 +0.5
590,796 - SO0570 0.19 +0.7
590,796 - SO0570 0.19 +0.0
590,809 - SO0570 0.20 +0.5
590,832 + SO0570 0.22 +0.8
590,860 + SO0570 0.25 +0.2
590,878 + SO0570 0.27 -0.1
591,001 + SO0570 0.39 +0.8
591,220 + SO0570 0.61 +0.9
591,234 + SO0570 0.63 -0.7
591,249 - SO0570 0.64 -0.6
591,323 + SO0570 0.71 -0.0
591,323 + SO0570 0.71 +1.1
591,341 + SO0570 0.73 +0.4
591,414 + SO0570 0.81 +0.7
591,414 + SO0570 0.81 +0.4
591,471 - SO0570 0.86 +1.4
591,471 - SO0570 0.86 +0.2
591,471 - SO0570 0.86 -0.1
591,471 - SO0570 0.86 -0.8
591,586 + -1.1
591,586 + -0.8
591,591 + +0.3
591,594 - +0.8
591,599 - +1.1
591,620 - -0.5
591,620 - +0.2
591,623 + -2.4
591,655 - -0.3
591,718 - -0.3
591,774 - +0.6
591,845 + +0.4
591,845 + +0.7
591,853 - +0.6
591,891 + +0.7
591,899 + -1.4
591,899 - -0.6
591,901 + +0.8
591,902 + -0.3
591,908 - +1.0
591,909 - +0.7
591,909 - +0.4
591,934 - -0.5
591,953 - -1.3
592,052 + -0.0
592,060 - +0.5
592,176 + +0.4
592,176 + -0.0
592,191 - +0.3
592,203 - -0.9
592,466 + SO0572 0.35 -0.5
592,481 + SO0572 0.37 -0.9
592,506 + SO0572 0.40 -0.2
592,513 + SO0572 0.41 +0.3
592,577 + SO0572 0.49 -0.1

Or see this region's nucleotide sequence