Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0557 and smtA are separated by 144 nucleotides smtA and SO0559 are separated by 394 nucleotides
SO0557: SO0557 - conserved hypothetical protein (NCBI ptt file), at 577,011 to 577,907
SO0557
SO0558: smtA - smtA protein (NCBI ptt file), at 578,052 to 578,834
smtA
SO0559: SO0559 - MaoC domain protein (NCBI ptt file), at 579,229 to 580,059
SO0559
Position (kb) 578
579 Strain fitness (log2 ratio) -2
-1
0
1
2 at 577.061 kb on + strand at 577.076 kb on + strand at 577.158 kb on - strand, within SO0557 at 577.158 kb on - strand, within SO0557 at 577.214 kb on - strand, within SO0557 at 577.389 kb on + strand, within SO0557 at 577.389 kb on + strand, within SO0557 at 577.389 kb on + strand, within SO0557 at 577.389 kb on + strand, within SO0557 at 577.572 kb on - strand, within SO0557 at 577.576 kb on + strand, within SO0557 at 577.576 kb on + strand, within SO0557 at 577.584 kb on - strand, within SO0557 at 577.584 kb on - strand, within SO0557 at 577.622 kb on - strand, within SO0557 at 577.667 kb on - strand, within SO0557 at 577.667 kb on - strand, within SO0557 at 577.713 kb on - strand, within SO0557 at 577.793 kb on + strand, within SO0557 at 577.813 kb on + strand, within SO0557 at 577.935 kb on - strand at 578.049 kb on + strand at 578.073 kb on + strand at 578.109 kb on + strand at 578.146 kb on - strand, within smtA at 578.246 kb on + strand, within smtA at 578.352 kb on + strand, within smtA at 578.463 kb on + strand, within smtA at 578.484 kb on - strand, within smtA at 578.494 kb on - strand, within smtA at 578.531 kb on - strand, within smtA at 578.532 kb on - strand, within smtA at 578.569 kb on - strand, within smtA at 578.595 kb on + strand, within smtA at 578.717 kb on + strand, within smtA at 578.745 kb on + strand, within smtA at 578.753 kb on - strand, within smtA at 578.760 kb on + strand at 578.768 kb on - strand at 578.775 kb on - strand at 578.836 kb on + strand at 578.836 kb on + strand at 578.836 kb on + strand at 578.846 kb on + strand at 578.846 kb on + strand at 578.860 kb on - strand at 578.864 kb on - strand at 578.866 kb on + strand at 578.876 kb on + strand at 578.884 kb on - strand at 578.987 kb on - strand at 579.005 kb on + strand at 579.005 kb on + strand at 579.005 kb on + strand at 579.013 kb on - strand at 579.013 kb on - strand at 579.036 kb on + strand at 579.043 kb on - strand at 579.135 kb on - strand at 579.138 kb on + strand at 579.193 kb on + strand at 579.369 kb on - strand, within SO0559 at 579.477 kb on + strand, within SO0559 at 579.477 kb on + strand, within SO0559 at 579.485 kb on - strand, within SO0559 at 579.554 kb on - strand, within SO0559 at 579.594 kb on - strand, within SO0559 at 579.594 kb on - strand, within SO0559 at 579.636 kb on - strand, within SO0559 at 579.645 kb on + strand, within SO0559 at 579.695 kb on + strand, within SO0559 at 579.703 kb on - strand, within SO0559 at 579.703 kb on - strand, within SO0559 at 579.759 kb on - strand, within SO0559 at 579.829 kb on + strand, within SO0559
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 577,061 + +1.0 577,076 + -0.4 577,158 - SO0557 0.16 +0.2 577,158 - SO0557 0.16 -0.5 577,214 - SO0557 0.23 +0.3 577,389 + SO0557 0.42 +1.5 577,389 + SO0557 0.42 +0.5 577,389 + SO0557 0.42 +0.1 577,389 + SO0557 0.42 -0.1 577,572 - SO0557 0.63 -0.4 577,576 + SO0557 0.63 +0.2 577,576 + SO0557 0.63 +0.7 577,584 - SO0557 0.64 +0.2 577,584 - SO0557 0.64 +0.4 577,622 - SO0557 0.68 +1.4 577,667 - SO0557 0.73 +1.3 577,667 - SO0557 0.73 -1.3 577,713 - SO0557 0.78 -0.0 577,793 + SO0557 0.87 -1.8 577,813 + SO0557 0.89 -0.0 577,935 - -0.9 578,049 + +0.5 578,073 + -1.2 578,109 + +0.2 578,146 - smtA SO0558 0.12 -0.5 578,246 + smtA SO0558 0.25 -0.5 578,352 + smtA SO0558 0.38 -0.5 578,463 + smtA SO0558 0.52 +0.4 578,484 - smtA SO0558 0.55 -1.0 578,494 - smtA SO0558 0.56 +1.0 578,531 - smtA SO0558 0.61 -0.7 578,532 - smtA SO0558 0.61 +0.2 578,569 - smtA SO0558 0.66 -0.1 578,595 + smtA SO0558 0.69 +0.0 578,717 + smtA SO0558 0.85 -1.1 578,745 + smtA SO0558 0.89 -0.6 578,753 - smtA SO0558 0.90 -1.6 578,760 + +0.4 578,768 - -0.2 578,775 - +1.6 578,836 + -0.0 578,836 + -0.7 578,836 + -0.3 578,846 + -1.2 578,846 + -0.3 578,860 - -0.3 578,864 - +2.1 578,866 + -0.4 578,876 + +0.0 578,884 - -0.3 578,987 - -0.3 579,005 + +0.3 579,005 + +0.6 579,005 + -1.0 579,013 - +1.6 579,013 - +0.8 579,036 + -0.0 579,043 - -0.0 579,135 - -1.1 579,138 + -0.7 579,193 + -1.5 579,369 - SO0559 0.17 -0.5 579,477 + SO0559 0.30 +0.0 579,477 + SO0559 0.30 -2.0 579,485 - SO0559 0.31 -1.1 579,554 - SO0559 0.39 -0.6 579,594 - SO0559 0.44 -0.4 579,594 - SO0559 0.44 +0.4 579,636 - SO0559 0.49 +0.3 579,645 + SO0559 0.50 -0.6 579,695 + SO0559 0.56 -0.4 579,703 - SO0559 0.57 -0.1 579,703 - SO0559 0.57 -1.0 579,759 - SO0559 0.64 -0.3 579,829 + SO0559 0.72 -1.5
Or see this region's nucleotide sequence