Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0926 and SO0927 are separated by 187 nucleotides SO0927 and SO0928 are separated by 374 nucleotides SO0928 and metK are separated by 421 nucleotides
SO0926: SO0926 - acetyltransferase, GNAT family (NCBI ptt file), at 955,094 to 955,708
SO0926
SO0927: SO0927 - hypothetical protein (NCBI ptt file), at 955,896 to 956,237
SO0927
SO0928: SO0928 - GGDEF domain protein (NCBI ptt file), at 956,612 to 957,565
SO0928
SO0929: metK - S-adenosylmethionine synthetase (NCBI ptt file), at 957,987 to 959,138
metK
Position (kb) 956
957
958 Strain fitness (log2 ratio) -1
0
1
2 at 955.614 kb on - strand, within SO0926 at 955.614 kb on - strand, within SO0926 at 955.624 kb on - strand, within SO0926 at 955.624 kb on - strand, within SO0926 at 955.624 kb on - strand, within SO0926 at 955.819 kb on + strand at 955.820 kb on + strand at 955.832 kb on - strand at 955.838 kb on + strand at 955.838 kb on + strand at 955.838 kb on + strand at 955.841 kb on - strand at 955.841 kb on - strand at 955.843 kb on + strand at 955.843 kb on + strand at 955.843 kb on + strand at 955.843 kb on + strand at 955.846 kb on - strand at 955.851 kb on - strand at 955.851 kb on - strand at 955.851 kb on - strand at 955.930 kb on + strand at 956.037 kb on + strand, within SO0927 at 956.056 kb on - strand, within SO0927 at 956.089 kb on + strand, within SO0927 at 956.121 kb on - strand, within SO0927 at 956.158 kb on + strand, within SO0927 at 956.166 kb on - strand, within SO0927 at 956.177 kb on + strand, within SO0927 at 956.195 kb on - strand, within SO0927 at 956.245 kb on + strand at 956.247 kb on - strand at 956.253 kb on - strand at 956.279 kb on - strand at 956.301 kb on - strand at 956.381 kb on + strand at 956.389 kb on - strand at 956.429 kb on + strand at 956.437 kb on - strand at 956.476 kb on + strand at 956.476 kb on + strand at 956.484 kb on - strand at 956.484 kb on - strand at 956.555 kb on - strand at 956.571 kb on + strand at 956.624 kb on + strand at 956.788 kb on + strand, within SO0928 at 956.834 kb on - strand, within SO0928 at 956.834 kb on - strand, within SO0928 at 956.838 kb on + strand, within SO0928 at 956.922 kb on + strand, within SO0928 at 956.983 kb on + strand, within SO0928 at 957.209 kb on - strand, within SO0928 at 957.294 kb on - strand, within SO0928 at 957.343 kb on + strand, within SO0928 at 957.351 kb on - strand, within SO0928 at 957.386 kb on - strand, within SO0928 at 957.436 kb on + strand, within SO0928 at 957.444 kb on - strand, within SO0928 at 957.544 kb on - strand at 958.005 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 955,614 - SO0926 0.85 -0.0 955,614 - SO0926 0.85 +0.2 955,624 - SO0926 0.86 +0.8 955,624 - SO0926 0.86 -0.4 955,624 - SO0926 0.86 +0.6 955,819 + -1.0 955,820 + -0.2 955,832 - -0.7 955,838 + -0.3 955,838 + +0.2 955,838 + -0.1 955,841 - -0.1 955,841 - -0.4 955,843 + -0.2 955,843 + -0.4 955,843 + -0.9 955,843 + +0.4 955,846 - +0.2 955,851 - -0.1 955,851 - +0.0 955,851 - +0.2 955,930 + -0.9 956,037 + SO0927 0.41 -0.2 956,056 - SO0927 0.47 -0.5 956,089 + SO0927 0.56 -0.1 956,121 - SO0927 0.66 +0.4 956,158 + SO0927 0.77 -0.1 956,166 - SO0927 0.79 +0.1 956,177 + SO0927 0.82 -0.2 956,195 - SO0927 0.87 -0.1 956,245 + -0.5 956,247 - -0.1 956,253 - -0.4 956,279 - -0.3 956,301 - -0.6 956,381 + -0.4 956,389 - -0.2 956,429 + -0.6 956,437 - -0.3 956,476 + -0.4 956,476 + -0.7 956,484 - +0.7 956,484 - +0.3 956,555 - -0.5 956,571 + -0.8 956,624 + -1.3 956,788 + SO0928 0.18 -0.7 956,834 - SO0928 0.23 +0.1 956,834 - SO0928 0.23 +0.0 956,838 + SO0928 0.24 +1.3 956,922 + SO0928 0.32 -0.4 956,983 + SO0928 0.39 +0.6 957,209 - SO0928 0.63 -0.7 957,294 - SO0928 0.71 +0.4 957,343 + SO0928 0.77 +1.9 957,351 - SO0928 0.77 +0.4 957,386 - SO0928 0.81 +0.6 957,436 + SO0928 0.86 +0.6 957,444 - SO0928 0.87 +0.2 957,544 - +0.6 958,005 + +2.2
Or see this region's nucleotide sequence