Strain Fitness in Shewanella oneidensis MR-1 around SO0192

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0190 and cysQ-1 are separated by 69 nucleotidescysQ-1 and SO0192 are separated by 7 nucleotidesSO0192 and SO0193 are separated by 235 nucleotidesSO0193 and SO0194 overlap by 10 nucleotides SO0190: SO0190 - MutT/nudix family protein (NCBI ptt file), at 200,294 to 200,845 SO0190 SO0191: cysQ-1 - cysQ protein (NCBI ptt file), at 200,915 to 201,727 cysQ-1 SO0192: SO0192 - acetyltransferase, GNAT family (NCBI ptt file), at 201,735 to 202,178 SO0192 SO0193: SO0193 - transcriptional regulator, TetR family (NCBI ptt file), at 202,414 to 203,025 SO0193 SO0194: SO0194 - acyltransferase family protein (NCBI ptt file), at 203,016 to 204,878 SO0194 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1 2at 200.737 kb on + strand, within SO0190at 200.743 kb on + strand, within SO0190at 200.751 kb on - strand, within SO0190at 200.965 kb on + strandat 200.989 kb on + strandat 201.040 kb on - strand, within cysQ-1at 201.194 kb on + strand, within cysQ-1at 201.241 kb on + strand, within cysQ-1at 201.292 kb on + strand, within cysQ-1at 201.371 kb on + strand, within cysQ-1at 201.379 kb on - strand, within cysQ-1at 201.392 kb on + strand, within cysQ-1at 201.399 kb on + strand, within cysQ-1at 201.400 kb on - strand, within cysQ-1at 201.454 kb on + strand, within cysQ-1at 201.499 kb on - strand, within cysQ-1at 201.499 kb on - strand, within cysQ-1at 201.512 kb on + strand, within cysQ-1at 201.512 kb on + strand, within cysQ-1at 201.512 kb on + strand, within cysQ-1at 201.512 kb on + strand, within cysQ-1at 201.512 kb on + strand, within cysQ-1at 201.629 kb on + strand, within cysQ-1at 201.696 kb on - strandat 201.789 kb on + strand, within SO0192at 201.820 kb on - strand, within SO0192at 201.915 kb on + strand, within SO0192at 201.966 kb on + strand, within SO0192at 201.979 kb on + strand, within SO0192at 201.979 kb on + strand, within SO0192at 201.979 kb on + strand, within SO0192at 201.987 kb on - strand, within SO0192at 201.992 kb on - strand, within SO0192at 201.998 kb on - strand, within SO0192at 202.012 kb on + strand, within SO0192at 202.020 kb on - strand, within SO0192at 202.034 kb on + strand, within SO0192at 202.034 kb on + strand, within SO0192at 202.034 kb on + strand, within SO0192at 202.034 kb on + strand, within SO0192at 202.042 kb on - strand, within SO0192at 202.042 kb on - strand, within SO0192at 202.042 kb on - strand, within SO0192at 202.115 kb on + strand, within SO0192at 202.191 kb on - strandat 202.273 kb on + strandat 202.288 kb on - strandat 202.295 kb on - strandat 202.323 kb on - strandat 202.411 kb on - strandat 202.417 kb on - strandat 202.429 kb on + strandat 202.505 kb on + strand, within SO0193at 202.565 kb on - strand, within SO0193at 202.617 kb on - strand, within SO0193at 202.716 kb on - strand, within SO0193at 202.721 kb on + strand, within SO0193at 202.721 kb on + strand, within SO0193at 202.729 kb on - strand, within SO0193at 202.729 kb on - strand, within SO0193at 202.744 kb on + strand, within SO0193at 202.754 kb on + strand, within SO0193at 202.788 kb on - strand, within SO0193at 202.828 kb on - strand, within SO0193at 202.830 kb on + strand, within SO0193at 202.878 kb on + strand, within SO0193at 202.878 kb on + strand, within SO0193at 202.952 kb on - strand, within SO0193at 203.084 kb on - strandat 203.113 kb on + strandat 203.121 kb on - strandat 203.121 kb on - strandat 203.132 kb on + strandat 203.140 kb on - strandat 203.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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200,737 + SO0190 0.80 -1.1
200,743 + SO0190 0.81 -0.3
200,751 - SO0190 0.83 -0.8
200,965 + -0.3
200,989 + -0.2
201,040 - cysQ-1 SO0191 0.15 +0.6
201,194 + cysQ-1 SO0191 0.34 +0.2
201,241 + cysQ-1 SO0191 0.40 +0.0
201,292 + cysQ-1 SO0191 0.46 -0.9
201,371 + cysQ-1 SO0191 0.56 -0.3
201,379 - cysQ-1 SO0191 0.57 +2.0
201,392 + cysQ-1 SO0191 0.59 +0.7
201,399 + cysQ-1 SO0191 0.60 -0.2
201,400 - cysQ-1 SO0191 0.60 +0.6
201,454 + cysQ-1 SO0191 0.66 +0.2
201,499 - cysQ-1 SO0191 0.72 -1.5
201,499 - cysQ-1 SO0191 0.72 +2.4
201,512 + cysQ-1 SO0191 0.73 +0.0
201,512 + cysQ-1 SO0191 0.73 -0.2
201,512 + cysQ-1 SO0191 0.73 +0.0
201,512 + cysQ-1 SO0191 0.73 -0.5
201,512 + cysQ-1 SO0191 0.73 -1.4
201,629 + cysQ-1 SO0191 0.88 +2.4
201,696 - -0.8
201,789 + SO0192 0.12 -1.0
201,820 - SO0192 0.19 -1.0
201,915 + SO0192 0.41 +0.1
201,966 + SO0192 0.52 +0.2
201,979 + SO0192 0.55 -0.7
201,979 + SO0192 0.55 +0.9
201,979 + SO0192 0.55 +0.4
201,987 - SO0192 0.57 +0.9
201,992 - SO0192 0.58 -1.3
201,998 - SO0192 0.59 -0.8
202,012 + SO0192 0.62 -1.6
202,020 - SO0192 0.64 -1.2
202,034 + SO0192 0.67 -0.2
202,034 + SO0192 0.67 -0.2
202,034 + SO0192 0.67 -0.6
202,034 + SO0192 0.67 +0.6
202,042 - SO0192 0.69 +0.1
202,042 - SO0192 0.69 -0.2
202,042 - SO0192 0.69 -1.2
202,115 + SO0192 0.86 -0.2
202,191 - +0.4
202,273 + -0.5
202,288 - +0.3
202,295 - +0.2
202,323 - +0.4
202,411 - +0.5
202,417 - -0.3
202,429 + +0.2
202,505 + SO0193 0.15 -0.1
202,565 - SO0193 0.25 +0.3
202,617 - SO0193 0.33 +0.6
202,716 - SO0193 0.49 +0.7
202,721 + SO0193 0.50 +0.2
202,721 + SO0193 0.50 +0.1
202,729 - SO0193 0.51 +0.1
202,729 - SO0193 0.51 -0.7
202,744 + SO0193 0.54 +0.9
202,754 + SO0193 0.56 -0.5
202,788 - SO0193 0.61 -0.1
202,828 - SO0193 0.68 -0.4
202,830 + SO0193 0.68 -0.7
202,878 + SO0193 0.76 +0.0
202,878 + SO0193 0.76 -0.7
202,952 - SO0193 0.88 -2.0
203,084 - +0.7
203,113 + -1.1
203,121 - +0.3
203,121 - +0.3
203,132 + +0.2
203,140 - +0.3
203,143 - +0.5

Or see this region's nucleotide sequence