Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_2754 and SO2753.2 overlap by 14 nucleotides SO2753.2 and rnt are separated by 193 nucleotides rnt and SO_2756 are separated by 71 nucleotides
SO_2754: SO_2754 - no description, at 2,876,109 to 2,876,573
_2754
SO2753.2: SO2753.2 - hypothetical sodium-type flagellar protein MotY (NCBI ptt file), at 2,876,560 to 2,876,928
SO2753.2
SO2755: rnt - ribonuclease T (NCBI ptt file), at 2,877,122 to 2,877,790
rnt
SO_2756: SO_2756 - no description, at 2,877,862 to 2,878,467
_2756
Position (kb)
2876
2877 Strain fitness (log2 ratio)
-1
0
1 at 2875.730 kb on - strand at 2876.008 kb on + strand at 2876.140 kb on - strand at 2876.337 kb on - strand, within SO_2754 at 2876.411 kb on - strand, within SO_2754 at 2876.430 kb on + strand, within SO_2754 at 2876.460 kb on + strand, within SO_2754 at 2876.555 kb on + strand at 2876.586 kb on + strand at 2876.630 kb on + strand, within SO2753.2 at 2876.725 kb on - strand, within SO2753.2 at 2876.758 kb on - strand, within SO2753.2 at 2876.814 kb on - strand, within SO2753.2 at 2876.817 kb on + strand, within SO2753.2 at 2876.874 kb on - strand, within SO2753.2 at 2877.072 kb on - strand at 2877.754 kb on - strand at 2877.778 kb on - strand at 2877.778 kb on - strand at 2877.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,875,730 - +0.0 2,876,008 + +1.1 2,876,140 - +0.5 2,876,337 - SO_2754 0.49 -0.5 2,876,411 - SO_2754 0.65 +0.5 2,876,430 + SO_2754 0.69 +0.3 2,876,460 + SO_2754 0.75 +0.4 2,876,555 + +0.2 2,876,586 + +0.5 2,876,630 + SO2753.2 0.19 +0.3 2,876,725 - SO2753.2 0.45 +0.2 2,876,758 - SO2753.2 0.54 +0.5 2,876,814 - SO2753.2 0.69 -0.0 2,876,817 + SO2753.2 0.70 +0.9 2,876,874 - SO2753.2 0.85 +0.7 2,877,072 - +0.5 2,877,754 - -1.4 2,877,778 - -0.4 2,877,778 - -0.2 2,877,908 - +0.1
Or see this region's nucleotide sequence