Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3097 and SO3097.1 overlap by 4 nucleotides SO3097.1 and SO3097.2 are separated by 99 nucleotides SO3097.2 and SO3097.3 are separated by 14 nucleotides SO3097.3 and SO3097.4 overlap by 4 nucleotides SO3097.4 and SO_3098 are separated by 2 nucleotides SO_3098 and SO3099 are separated by 340 nucleotides
SO3097: SO3097 - conserved hypothetical protein (NCBI ptt file), at 3,222,448 to 3,223,152
SO3097
SO3097.1: SO3097.1 - hypothetical protein (NCBI ptt file), at 3,223,149 to 3,223,259
SO3097.1
SO3097.2: SO3097.2 - hypothetical sodium/proline symporter (NCBI ptt file), at 3,223,359 to 3,223,493
SO3097.2
SO3097.3: SO3097.3 - hypothetical sodium/proline symporter (NCBI ptt file), at 3,223,508 to 3,223,855
SO3097.3
SO3097.4: SO3097.4 - hypothetical sodium/proline symporter (NCBI ptt file), at 3,223,852 to 3,224,592
SO3097.4
SO_3098: SO_3098 - no description, at 3,224,595 to 3,224,753
_3098
SO3099: SO3099 - long-chain fatty acid transport protein, putative (NCBI ptt file), at 3,225,094 to 3,226,416
SO3099
Position (kb)
3223
3224
3225 Strain fitness (log2 ratio)
-1
0
1 at 3222.942 kb on - strand, within SO3097 at 3222.987 kb on + strand, within SO3097 at 3222.987 kb on + strand, within SO3097 at 3223.257 kb on + strand at 3223.373 kb on + strand, within SO3097.2 at 3223.373 kb on + strand, within SO3097.2 at 3223.381 kb on - strand, within SO3097.2 at 3223.438 kb on - strand, within SO3097.2 at 3223.529 kb on - strand at 3223.529 kb on - strand at 3223.550 kb on - strand, within SO3097.3 at 3223.555 kb on + strand, within SO3097.3 at 3223.672 kb on + strand, within SO3097.3 at 3223.749 kb on + strand, within SO3097.3 at 3223.788 kb on + strand, within SO3097.3 at 3224.075 kb on - strand, within SO3097.4 at 3224.075 kb on - strand, within SO3097.4 at 3224.094 kb on - strand, within SO3097.4 at 3224.116 kb on + strand, within SO3097.4 at 3224.300 kb on + strand, within SO3097.4 at 3224.324 kb on + strand, within SO3097.4 at 3224.388 kb on + strand, within SO3097.4 at 3224.677 kb on + strand, within SO_3098 at 3224.696 kb on + strand, within SO_3098 at 3224.799 kb on - strand at 3224.973 kb on + strand at 3225.124 kb on + strand at 3225.193 kb on + strand at 3225.193 kb on + strand at 3225.193 kb on + strand at 3225.388 kb on + strand, within SO3099 at 3225.406 kb on - strand, within SO3099 at 3225.406 kb on - strand, within SO3099 at 3225.477 kb on + strand, within SO3099 at 3225.493 kb on + strand, within SO3099
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,222,942 - SO3097 0.70 +0.3 3,222,987 + SO3097 0.76 -0.0 3,222,987 + SO3097 0.76 +0.0 3,223,257 + +0.7 3,223,373 + SO3097.2 0.10 -0.2 3,223,373 + SO3097.2 0.10 -0.1 3,223,381 - SO3097.2 0.16 -1.3 3,223,438 - SO3097.2 0.59 -0.5 3,223,529 - +0.1 3,223,529 - -0.1 3,223,550 - SO3097.3 0.12 -1.0 3,223,555 + SO3097.3 0.14 +0.5 3,223,672 + SO3097.3 0.47 +0.4 3,223,749 + SO3097.3 0.69 +0.8 3,223,788 + SO3097.3 0.80 +0.0 3,224,075 - SO3097.4 0.30 -0.3 3,224,075 - SO3097.4 0.30 +1.2 3,224,094 - SO3097.4 0.33 +0.5 3,224,116 + SO3097.4 0.36 +0.8 3,224,300 + SO3097.4 0.60 +0.4 3,224,324 + SO3097.4 0.64 -0.5 3,224,388 + SO3097.4 0.72 -0.1 3,224,677 + SO_3098 0.52 -0.2 3,224,696 + SO_3098 0.64 -0.3 3,224,799 - +0.9 3,224,973 + +0.8 3,225,124 + -0.7 3,225,193 + +0.0 3,225,193 + -0.2 3,225,193 + +0.5 3,225,388 + SO3099 0.22 +0.1 3,225,406 - SO3099 0.24 +0.4 3,225,406 - SO3099 0.24 +0.4 3,225,477 + SO3099 0.29 +0.3 3,225,493 + SO3099 0.30 +0.9
Or see this region's nucleotide sequence